Publications - Tech-X Corporation %

Welcome to our Publications page, a comprehensive archive that exhibits the intellectual prowess and innovation of our dedicated Tech-X Corporation team and advanced software solutions. Each listing encapsulates the shared knowledge and creativity that drives our pursuit of excellence. Please browse the extensive catalog that spans a diverse range of topics and studies, each having left a distinctive mark on their respective fields. Please do not hesitate to contact us if you encounter any difficulty accessing a publication through the associated link. We’re happy to provide you with a copy of the paper to ensure that our wealth of knowledge remains accessible and continues to inspire.

Plasma Discharge

V. Harid, D. Main, M. Gołkowski, A. Sahai, J. Wewerka, S. T.R. Chilukury, and E. Jauregui, “Improving Radio Transmission Through a Dense Plasma via Electron-Neutral Collisions,” URSI Radio Sci. Lett. 4, (2022). https://doi.org/10.46620/22-0024
Thomas G. Jenkins, Gregory R. Werner, and John R. Cary, “Dispersion and the speed-limited particle-in-cell algorithm”, Phys. Plasmas 28, 062107 (2021). http://doi.org/10.1063/5.0046935
Joseph G. Theis, Gregory R. Werner, Thomas G. Jenkins, and John R. Cary, “Computing the Paschen curve for argon with speed-limited particle-in-cell simulation”, Phys. Plasmas 28, 063513 (2021). https://doi.org/10.1063/5.0051095
J. R. Myra, M. T. Elias, D. Curreli, and T. G. Jenkins, “Effect of net direct current on the properties of radio frequency sheaths: simulation and cross-code comparison”, Nucl. Fusion 61, 016030 (2021). https://doi.org/10.1088/1741-4326/abc4c4
M. Elias, D. Curreli, T. G. Jenkins, J. R. Myra, and J. Wright, “Numerical model of the radio-frequency magnetic presheath including wall impurities”, Phys. Plasmas 26, 092508 (2019); https://doi.org/10.1063/1.5109256
L Couëdel, D Artis, M P Khanal, C Pardanaud, S Coussan, S LeBlanc, T Hall, E Thomas Jr, U Konopka, M Park, and C Arnas, “Influence of magnetic field strength on nanoparticle growth in a capacitively-coupled radio-frequency Ar/C2H2 discharge”, Plasma Research Express 1, 015012 (2019). https://doi.org/10.1088/2516-1067/ab045e
T. G. Jenkins, A. M. Chap, G. R. Werner, and J. R. Cary, “Speed-Limited Particle-in-Cell Modeling of Low-Temperature Plasma Discharges”, Proceedings of the 22nd IEEE International Pulsed Power Conference, Orlando, Florida, 1-4 (2019). https://doi.org/10.1109/PPPS34859.2019.9009692
N. Crossette, T. G. Jenkins, J. R. Cary, J. Leddy, and D. N. Smithe, “Determination of First Townsend Ionization Coefficient by Simulation”, Proceedings of the 22nd IEEE International Pulsed Power Conference, Orlando, Florida, 1-3 (2019). https://doi.org/10.1109/PPPS34859.2019.9009919
Gregory R. Werner, Thomas G. Jenkins, Andrew M. Chap, and John R. Cary, “Speeding up simulations by slowing down particles: Speed-limited particle-in-cell simulation”, Phys. Plasmas 25, 123512 (2018). http://dx.doi.org/10.1063/1.5061683
Thomas G. Jenkins and David N. Smithe, “Time-Domain Modeling of RF Antennas and Plasma-Surface Interactions”, EPJ Web of Conferences 157, 03021 (2017). https://doi.org/10.1051/epjconf/201715703021
T. G. Jenkins and D. N. Smithe, “High-Performance Computational Modeling of Plasma-Surface Interactions and RF Antennas”, Proceedings of the 26th IAEA Fusion Energy Conference, TH/P4-34 (2016). https://conferences.iaea.org/event/98/contributions/11689/attachments/5972/7347/Jenkins_IAEA_2016.pdf
Ming-Chieh Lin, Chuandong Zhou, and David N. Smithe, “An External Circuit Model for 3-D Electromagnetic Particle-In-Cell Simulations,” IEEE Transactions on Electron Devices 61, 1742-1748 (2014). https://doi.org/10.1109/TED.2014.2304715
T. G. Jenkins and D. N. Smithe, “RF models for plasma-surface interactions: Sheath boundary conditions with dielectrics,” Proceedings of the IEEE 41st International Conference on Plasma Sciences (ICOPS) held with 2014 IEEE International Conference on High-Power Particle Beams (BEAMS), 1-6 (2014). https://doi.org/10.1109/PLASMA.2014.7012772
Paul L.G. Lebrun, James F. Amundson, Panagiotis G. Spentzouris, Seth A. Veitzer, and Peter Stoltz, “Simulation of the Electron Flux into the Main Injector Electron Cloud Retarding Field Analyzer Using Vorpal”, The Open Plasma Physics Journal 6, 1-5 (2013). https://doi.org/10.2174/1876534301306010001
Yongjun Choi, John Loverich, Sudhakar Mahalingam, and Peter Messmer, “Towards Hall Thruster Erosion Prediction Using a Kinetic Plasma Model and a Molecular Dynamics Simulation,” Proceedings of the 48th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition, 624 (2010). https://doi.org/10.2514/6.2010-624
Yongjun Choi, Sudhakar Mahlingam, John Loverich, and Peter Messmer, “Predicting Hall Thruster Operational Lifetime Using a Kinetic Plasma Model and a Molecular Dynamics Simulation,” Proceedings of the 46th AIAA/ASME/SAE/ASEE Joint Propulsion Conference & Exhibit, 6941 (2010). https://doi.org/10.2514/6.2010-6941
Z. Insepov, J. Norem, Th. Proslier, S. Mahalingam, and S. Veitzer, “Numerical Modeling of Arcs in Accelerators”, Proceedings of LINAC2010, MOP066 (2010). https://accelconf.web.cern.ch/LINAC2010/papers/mop066.pdf
Z. Insepov, J. Norem, and S. Veitzer, “Atomistic self-sputtering mechanisms of rf breakdown in high-gradient linacs”, Nuclear Instruments and Methods in Physics Research Section B 268, 642-650 (2010). https://doi.org/10.1016/j.nimb.2009.12.016
Michael Jonell, James Menart, and Sudhakar Mahalingam, “Particle-in-Cell Model of the NEXT Ion Engine at Numerous Throttling Conditions”, Proceedings of the 46th AIAA/ASME/SAE/ASEE Joint Propulsion Conference & Exhibit, 6863 (2010). https://doi.org/10.2514/6.2010-6863
Alexandre Likhanskii, “Particle-in-Cell Modeling of the Pulsed DBD Plasma Actuator”, Proceedings of the 40th Fluid Dynamics Conference and Exhibit, 5101 (2010). https://doi.org/10.2514/6.2010-5101
Alexandre Likhanskii, Mikhail Shneider, Dmitry Opaits, Sergey Macheret, and Richard Miles, “Limitations of the DBD effects on the external flow”, Proceedings of the 48th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition, 470 (2010). https://doi.org/10.2514/6.2010-470
Sudhakar Mahalingam, Yongjun Choi, J. O. H. N. Loverich, Peter H. Stoltz, Mike Jonell, and J. Menart, “Dynamic Electric Field Calculations Using a Fully Kinetic Ion Thruster Discharge Chamber Model”, Proceedings of the 46th AIAA/ASME/SAE/ASEE Joint Propulsion Conference & Exhibit, 6944 (2010). https://doi.org/10.2514/6.2010-6944
Sudhakar Mahalingam and James A. Menart, “Particle-Based Plasma Simulations for an Ion Engine Discharge Chamber”, Journal of Propulsion and Power 26, 673-688 (2010). https://doi.org/10.2514/1.45954
S. Mahalingam, S. A. Veitzer, and P. H. Stoltz, “High-gradient RF box cavity breakdown simulations using 3-D particle tracking code VORPAL”, Proceedings of the 2010 IEEE International Power Modulator and High Voltage Conference, 731-734 (2010). https://doi.org/10.1109/IPMHVC.2010.5958463
Seth A. Veitzer, Sudhakar Mahalingam, Peter H. Stoltz, and J. Norem, “Modeling Breakdown and Electron Orbits in High‐Gradient Accelerating Cavities”, AIP Conference Proceedings 1299, 376 (2010). https://doi.org/10.1063/1.3520346
Yongjun Choi, Iain D. Boyd, and Michael Keidar, “Effect of a Magnetic Field in Simulating the Plume-Field of an Anode Layer Hall Thruster”, Journal of Applied Physics 105, 013303 (2009). https://doi.org/10.1063/1.3055399
Z. Insepov, J. Norem, D. Huang, S. Mahalingam, P. Stoltz, and S. Veitzer, “Modeling RF Breakdown Arcs”, Proceedings of PAC09, 800-802 (2009). https://accelconf.web.cern.ch/pac2009/papers/tu5pfp001.pdf
Michael Jonell, James Menart, and Sudhakar Mahalingam, “Particle Based Plasma Simulation of NEXT Ion Engine”, In Proceedings of the 45th AIAA/ASME/SAE/ASEE Joint Propulsion Conference & Exhibit (2009). https://doi.org/10.2514/6.2009-4818
S. O. Cetiner, P. Stoltz, P. Messmer, and J.-L. Cambier, “Dependence of electron peak current on hollow cathode dimensions and seed electron energy in a pseudospark discharge”, J. Appl. Phys. 103, 023304 (2008). https://doi.org/10.1063/1.2832507
S. Mahalingam, J. R. Cary, P. H. Stoltz, and S. A. Veitzer, “Modeling breakdown in RF cavities using Particle-in-Cell (PIC) Codes”, In Proceedings of EPAC08, Genoa, Italy (2008). https://accelconf.web.cern.ch/e08/papers/wepp111.pdf
Sudhakar Mahalingam and James Menart, “Physical parametric studies in an ion engine discharge chamber using PIC-MCC simulations”, 44th AIAA/ASME/SAE/ASEE Joint Propulsion Conference & Exhibit, Hartford, CT (2008). https://doi.org/10.2514/6.2008-4733
S. Mahalingam, S. A. Veitzer, and P. H. Stoltz, “Modeling breakdown processes in RF cavities using Particle-in-Cell (PIC) Codes”, In Proceedings of 28th IEEE International Power Modulator and High Voltage Conference, Las Vegas, NV (2008). https://doi.org/10.1109/IPMC.2008.4743640
Penescu L., R. Catheralla, J. Lettrya, and T. Storaa, “Numerical simulations of space charge effects and plasma dynamics for FEBIAD ion sources”, Nuclear Instruments and Methods in Physics Research Section B 266, 4415-4419 (2008). https://doi.org/10.1016/j.nimb.2008.05.071
Peter H. Stoltz, Brian Granger, Ammar Hakim, Scott W. Sides, and Seth A. Veitzer, “Effects of Sputtering of and Radiation by Aluminium on Magnetized Target Fusion Plasmas”, Journal of Fusion Energy 27, 119-122 (2008). https://doi.org/10.1007/s10894-007-9102-5
David N. Smithe, “Time domain modeling of plasmas at RF time-scales”, Journal of Physics: Conference Series 78, 012069 (2007). https://doi.org/10.1088/1742-6596/78/1/012069
Seth A. Veitzer, Peter H. Stoltz, John J. Barnard, “Evolution of the energy distribution of ions moving in aluminum targets”, Nuclear Instruments and Methods in Physics Research Section A 577, 207-210 (2007). https://doi.org/10.1016/j.nima.2007.02.089
Seth A. Veitzer and Peter H. Stoltz, “Simulations of electron generation and dynamics in a hollow cathode with applied magnetic field”, Nucl. Instrum. and Meth. in Physics Research Section B 261, 204-208 (2007). https://doi.org/10.1016/j.nimb.2007.04.291
P. H. Stoltz, J. P. Verboncoeur, R. H. Cohen, A. W. Molvik, J-L. Vay, and S. A. Veitzer, “Modeling ion-induced electrons in the High Current Experiment”, Physics of plasmas 13, 056702 (2006). https://doi.org/10.1063/1.2179027
Peter Messmer and David L. Bruhwiler, “A parallel electrostatic solver for the VORPAL code”, Computer Physics Communications 164, 118-121 (2004). https://doi.org/10.1016/j.cpc.2004.06.018
P. Messmer, “Electromagnetic modeling of dusty plasmas”, In Proc. International Workshop on Applied Parallel Computing (PARA04), State-of-the-Art in Scientific Computing, Lecture Notes in Computer Science 3732, 583-589 (2004). https://doi.org/10.1007/11558958_69
P. H. Stoltz, M. A. Furman, J.-L. Vay, A. W. Molvik, and R. H. Cohen, “Numerical Simulation of the Generation of Secondary Electrons in the High Current Experiment”, Phys. Rev. ST Accel. Beams 6, 054701 (2003). https://doi.org/10.1103/PhysRevSTAB.6.054701

Plasma Acceleration

Zsolt Lécz, Alexander Andreev, Ivan Konoplev, Andrei Seryi, and Jonathan Smith, “Trains of electron micro-bunches in plasma wake-field acceleration”, Plasma Physics and Controlled Fusion 60, 075012 (2018). https://doi.org/10.1088/1361-6587/aac064
Y. Martinez Palenzuela, B.A. Marsh, J. Ballof, R. Catherall, K. Chrysalidis, T.E. Cocolios, B. Crepieux, T. Day Goodacre, V.N. Fedosseev, M.H. Huyse, P.B. Larmonier, J.P. Ramos, S. Rothe, J.D.A. Smith, T. Stora, P. Van Duppen, and S. Wilkins, “Enhancing the extraction of laser-ionized beams from an arc discharge ion source volume”, Nuclear Instruments and Methods in Physics Research Section B 431, 59-66 (2018). https://doi.org/10.1016/j.nimb.2018.06.006
Zs. Lécz, A. Andreev, A. Seryi, I. Konoplev, and Jonathan Smith, “Self-injection of multiple electron microbunches into a beam-driven plasma bubble”, in Proceedings of the 45th EPS Conference on Plasma Physics, P2-2023 (2018). http://ocs.ciemat.es/EPS2018PAP/pdf/P2.2023.pdf
H. Zhang, I. V. Konoplev, G. Doucas, and J. Smith, “Concept of a tunable source of coherent THz radiation driven by a plasma modulated electron beam”, Physics of Plasmas 25, 043111 (2018). https://doi.org/10.1063/1.5017551
Bernhard Hidding, Erik Adli, Gerard Andonian, Andrew Beaton, David Bruhwiler, John Cary, Christine Clarke et al., “First Measurements of Trojan Horse Injection in a Plasma Wakefield Accelerator”, Proceedings of IPAC2017, TUYB1 (2017). https://accelconf.web.cern.ch/IPAC2017/papers/tuyb1.pdf
Adam V. Higuera and John R. Cary, “Structure-preserving second-order integration of relativistic charged particle trajectories in electromagnetic fields”, Physics of Plasmas 24, 052104 (2017). https://doi.org/10.1063/1.4979989
Y. Wei, S. Jamison, G. Xia, K. Hanahoe, Y. Li, J. D. A. Smith, and C. P. Welsch, “Beam quality study for a grating-based dielectric laser-driven accelerator”, Physics of Plasmas 24, 023102 (2017). https://doi.org/10.1063/1.4975080
Y. Wei, G. Xia, J. D. A. Smith, and C. P. Welsch, “Dual-gratings with a Bragg reflector for dielectric laser-driven accelerators”, Physics of Plasmas 24, 073115 (2017). https://doi.org/10.1063/1.4993206
J. R. Cary, D. T. Abell, G. I. Bell, B. M. Cowan, J. R. King, D. Meiser, I. V. Pogorelov, and G. R. Werner, “Select Advances in Computational Accelerator Physics”, IEEE Transactions on Nuclear Science 63, 823-841 (2016). https://doi.org/10.1109/TNS.2015.2500686
Kiran G. Sonnad and John R. Cary, “Near equilibrium distributions for beams with space charge in linear and nonlinear periodic focusing systems”, Physics of Plasmas 22, 043120 (2015). https://doi.org/10.1063/1.4919033
Z. Lecz, O. Boine-Frankenheim, and V. Kornilov, “Transverse divergence in target normal sheath acceleration of a thick contamination layer”, Nuclear Instruments and Methods in Physics Research Section A 774, 42-50 (2015). https://doi.org/10.1016/j.nima.2014.11.062
Peter Schmidt, Oliver Boine-Frankenheim, and Peter Mulser, “Optimum laser parameters for 1D radiation pressure acceleration”, Laser and Particle Beams 33, 387-396 (2015). https://doi.org/10.1017/S0263034615000336
B Hidding, G G Manahan, O Karger, A Knetsch, G Wittig, D A Jaroszynski, Z-M Sheng, Y Xi, A Deng, J B Rosenzweig, G Andonian, A Murokh, G Pretzler, D L Bruhwiler, and J Smith, “Ultrahigh brightness bunches from hybrid plasma accelerators as drivers of 5th generation light sources”, J. Phys. B: At. Mol. Opt. Phys. 47, 234010 (2014). https://doi.org/10.1088/0953-4075/47/23/234010
Kiran G. Sonnad, Kenneth C. Hammond, Robert M. Schwartz, and Seth A. Veitzer, “Simulation and analysis of TE wave propagation for measurement of electron cloud densities in particle accelerators”, Nuclear Instruments and Methods in Physics Research Section A 754, 83-93 (2014). https://doi.org/10.1016/j.nima.2014.03.052
G. Xia, D. Angal-Kalinin, J. Clarke, J. Smith, E. Cormier-Michel, J. Jones, P.H. Williams, J.W. Mckenzie, B.L. Militsyn, K. Hanahoe, O. Mete, A. Aimidula, and C.P. Welsch, “A plasma wakefield acceleration experiment using CLARA beam”, Nuclear Instruments and Methods in Physics Research Section A 740, 165-172 (2014). https://doi.org/10.1016/j.nima.2013.10.092
Oliver SebastianHaas, OliverBoine-Frankenheim, and Fedor Petrov, “Simulations of the electron cloud buildup and its influence on the microwave transmission measurement”, Nuclear Instruments and Methods in Physics Research Section A 729, 290-295 (2013). https://doi.org/10.1016/j.nima.2013.07.051
Z.Lécz, O.Boine-Frankenheim, and V. Kornilov, “Target normal sheath acceleration for arbitrary proton layer thickness”, Nuclear Instruments and Methods in Physics Research Section A 727, 51-58 (2013). https://doi.org/10.1016/j.nima.2013.05.163
Benjamin M. Cowan, David L. Bruhwiler, John R. Cary, Estelle Cormier-Michel, and Cameron G. R. Geddes, “Generalized algorithm for control of numerical dispersion in explicit time-domain electromagnetic simulations”, Phys. Rev. ST Accel. Beams 16, 041303 (2013). https://doi.org/10.1103/PhysRevSTAB.16.041303
Ajay K. Upadhyay, Sushil A. Samant, and S. Krishnagopal, “Tailoring the laser pulse shape to improve the quality of the self-injected electron beam in laser wakefield acceleration”, Physics of Plasmas 20, 013106 (2013). https://doi.org/10.1063/1.4775726
Y. Xi, B. Hidding, D. Bruhwiler, G. Pretzler, and J. B. Rosenzweig, “Hybrid modeling of relativistic underdense plasma photocathode injectors”, Phys. Rev. ST Accel. Beams 16, 031303 (2013). https://doi.org/10.1103/PhysRevSTAB.16.031303
B. M. COWAN, S. Y. KALMYKOV, A. BECK, X. DAVOINE, K. BUNKERS, A. F. LIFSCHITZ, E. LEFEBVRE, D. L. BRUHWILER, B. A. SHADWICK, and D. P. UMSTADTER, “Computationally efficient methods for modelling laser wakefield acceleration in the blowout regime”, Journal of Plasma Physics 78, 469-482 (2012). https://doi.org/10.1017/S0022377812000517
B. Hidding, G. Pretzler, J. B. Rosenzweig, T. Königstein, D. Schiller, and D. L. Bruhwiler, “Ultracold Electron Bunch Generation via Plasma Photocathode Emission and Acceleration in a Beam-Driven Plasma Blowout”, Phys. Rev. Lett. 108, 035001 (2012). https://doi.org/10.1103/PhysRevLett.108.035001
Ajay K. Upadhyay, Sushil Arun Samant, and Srinivas Krishnagopal, “Role of the laser pulse-length in producing high-quality electron beams in a homogenous plasma”, Physics of Plasmas 19, 073110 (2012). https://doi.org/10.1063/1.4737194
P. Piot, C. Behrens, C. Gerth, M. Dohlus, F. Lemery, D. Mihalcea, P. Stoltz, and M. Vogt, “Generation and Characterization of Electron Bunches with Ramped Current Profiles in a Dual-Frequency Superconducting Linear Accelerator”, Phys. Rev. Lett. 108, 229902 (2012). https://doi.org/10.1103/PhysRevLett.108.034801
Benjamin M. Cowan, David L. Bruhwiler, Estelle Cormier-Michel, Eric Esarey, Cameron GR Geddes, Peter Messmer, and Kevin M. Paul, “Characteristics of an envelope model for laser–plasma accelerator simulation”, Journal of Computational Physics 230, 61-86 (2011). https://doi.org/10.1016/j.jcp.2010.09.009
Z. Insepov, J. Norem, Th. Proslier, S. Mahalingam, and S. Veitzer, “Numerical Modeling of Arcs in Accelerators”, Proceedings of LINAC2010, MOP066 (2010). https://accelconf.web.cern.ch/LINAC2010/papers/mop066.pdf
Z. Insepov, J. Norem, and S. Veitzer, “Atomistic self-sputtering mechanisms of rf breakdown in high-gradient linacs”, Nuclear Instruments and Methods in Physics Research Section B 268, 642-650 (2010). https://doi.org/10.1016/j.nimb.2009.12.016
J. Norem, Z. Insepov, D. Huang, S. Mahalingam, and S. Veitzer, “The problem of RF Gradient Limits,” AIP Conference Proceedings 1222, 348 (2010). https://doi.org/10.1063/1.3399340
A V Sobol, D L Bruhwiler, G I Bell, A Fedotov, and V Litvinenko, “Numerical calculation of dynamical friction in electron cooling systems, including magnetic field perturbations and finite time effects”, New J. Phys. 12, 093038 (2010). https://doi.org/10.1088/1367-2630/12/9/093038
Seth A. Veitzer, Sudhakar Mahalingam, Peter H. Stoltz, and J. Norem, “Modeling Breakdown and Electron Orbits in High‐Gradient Accelerating Cavities”, AIP Conference Proceedings 1299, 376 (2010). https://doi.org/10.1063/1.3520346
G. R Werner, C. A. Bauer, and J. R. Cary, “Wakefields in Photonic Crystal Cavities”, Phys. Rev. ST Accel. Beams 12, 071301 (2009). https://doi.org/10.1103/PhysRevSTAB.12.071301
David L. Bruhwiler, John R. Cary, Benjamin M. Cowan, Kevin Paul, Cameron G. R. Geddes, Paul J. Mullowney, Peter Messmer, Eric Esarey, Estelle Cormier-Michel, Wim Leemans, and Jean-Luc Vay, “New Developments in the Simulation of Advanced Accelerator Concepts”, AIP Conference Proceedings 1086, 29 (2009). https://doi.org/10.1063/1.3080922
E. Cormier-Michel, C.G.R. Geddes, E. Esarey, C.B. Schroeder, Cs. Toth, D.L. Bruhwiler, K. Paul, B. Cowan, and W.P. Leemans, “Scaled simulations of a 10 GeV accelerator,” AIP Conference Proceedings 1086, 297 (2009). https://doi.org/10.1063/1.3080921
B. Cowan, D. Bruhwiler, E. Cormier‐Michel, E. Esarey, C. G. R. Geddes, P. Messmer, and K. Paul, “Laser wakefield simulation using a speed-of-light frame envelope model,” AIP Conference Proceedings 1086, 309 (2009). https://doi.org/10.1063/1.3080924
C.G.R. Geddes, E. Cormier-Michel, E. Esarey, C.B. Schroeder, W.P. Leemans, D.L. Bruhwiler, B. Cowan, C. Nieter, K. Paul, and J.R. Cary, “Scaled Simulation Design of High Quality Laser Wakefiled Accelerator Stages”, Proceedings of PAC09, WE6RFP075 (2009). https://escholarship.org/uc/item/4mj0c8w0
C.G.R. Geddes, E. Cormier-Michel, E. Esarey, K. Nakamura, G.R. Plateau, C.B. Schroeder, Cs. Toth, D.L. Bruhwiler, J.R. Cary, and W.P. Leemans, “Plasma gradient controlled injection and postacceleration of high quality electron bunches,” AIP Conference Proceedings 1086, 12 (2009). https://doi.org/10.1063/1.3080892
C. G. R. Geddes, E Cormier-Michel, E. H. Esarey, C. B. Schroeder, J.-L. Vay, W. P. Leemans, D. L.. Bruhwiler, J. R. Cary, B. Cowan, M. Durant, P. Hamill, P. Messmer, P. Mullowney, C. Nieter, K. Paul, S. Shasharina, S. Veitzer, G. Weber, O. Rübel, D. Ushizima, Prabhat, W.Bethel, and J. Wu. “Large Fields for Smaller Facility Sources”, SciDAC Review, 13-21 (2009). https://crd.lbl.gov/assets/pubs_presos/geddes.pdf
W.P. Leemans, E. Esarey, C.G.R. Geddes, Cs. Toth, C.B. Schroeder, K. Nakamura, A.J. Gonsalves, D. Panasenko, E. Cormier-Michel, G.R. Plateau, C. Lin, D.L. Bruhwiler, and J.R. Cary, “Progress on laser plasma accelerator development using transversely and longitudinally shaped plasmas”, Comptes Rendus Physique 10, 130-139 (2009). https://doi.org/10.1016/j.crhy.2009.05.001
K. Paul, C. Huang, D. L. Bruhwiler, W. B. Mori, F. S. Tsung, E. Cormier-Michel, C. G. R. Geddes, B. Cowan, J. R. Cary, E. Esarey, R. A. Fonseca, S. F. Martins, and L. O. Silva, “Benchmarking the Codes VORPAL, OSIRIS, and QuickPIC with Laser Wakefield Acceleration Simulations”, AIP Conference Proceedings 1086, 315 (2009). https://doi.org/10.1063/1.3080925
K. H. Pae, I. W. Choi, S. J. Hahn, J. R. Cary, and J. Lee, “Proposed hole-target for improving maximum proton energy driven by a short intense laser pulse”, Phys. Plasma 16, 073106 (2009). https://doi.org/10.1063/1.3174434
J. Qiang, R. D. Ryne, M. Venturini, A. A. Zholents, and I. V. Pogorelov, “High resolution simulation of beam dynamics in electron linacs for x-ray free electron lasers”, Phys. Rev. ST Accel. Beams 12, 100702 (2009). https://doi.org/10.1103/PhysRevSTAB.12.100702
S. A. Veitzer, P. LeBrun, J. R. Cary, P. Spentzouris, P. H. Stoltz, and J. F. Amundson, “Computation of Electron Cloud Diagnostics and Mitigation in the Main Injector”, J. Phys.: Conf. Ser. 180, 012007 (2009). https://doi.org/10.1088/1742-6596/180/1/012007
George I. Bell, David L. Bruhwiler, Alexei Fedotov, Andrey Sobol, Richard S. Busby, Peter Stoltz, Dan T. Abell, Peter Messmer, Ilan Ben-Zvi, and Vladimir Litvinenko, “Simulating the dynamical friction force on ions due to a briefly co-propagating electron beam”, Journal of Computational Physics 227, 8714-8735 (2008). https://doi.org/10.1016/j.jcp.2008.06.019
Benjamin M. Cowan, “Three-dimensional dielectric photonic crystal structures for laser-driven acceleration”, Phys. Rev. ST Accel. Beams 11, 011301 (2008). https://doi.org/10.1103/PhysRevSTAB.11.011301
C G R Geddes, D L Bruhwiler, J R Cary, W B Mori, J-L Vay, S F Martins, T Katsouleas, E Cormier-Michel, W M Fawley, C Huang, X Wang, B Cowan, V K Decyk, E Esarey, R A Fonseca, W Lu, P Messmer, P Mullowney, K Nakamura, K Paul, G R Plateau, C B Schroeder, L O Silva, C Toth, F S Tsung, M Tzoufras, T Antonsen, J Vieira, and W P Leemans, “Computational studies and optimization of wakefield accelerators”, J. Physics: Conf. Series 125, 012002 (2008). https://doi.org/10.1088/1742-6596/125/1/012002
C Ng, V Akcelik, A Candel, S Chen, L Ge, A Kabel, Lie-Quan Lee, Z Li, E Prudencio, G Schussman, R Uplenchwar, L Xiao, K Ko, T Austin, J R Cary, S Ovtchinnikov, D N Smith, G R Werner, and L Bellantoni, “Design and optimization of large accelerator systems through high-fidelity electromagnetic simulations”, J. Physics: Conf. Series 125, 012003 (2008). https://doi.org/10.1088/1742-6596/125/1/012003
Károly Németh, Baifei Shen, Yuelin Li, Robert Crowell, Katherine C. Harkay, and John R. Cary, “Laser driven coherent betatron oscillation in a laser-wakefield cavity”, Phys. Rev. Lett. 100, 095002 (2008). https://doi.org/10.1103/PhysRevLett.100.095002
Liangliang Ji, Baifei Shen, Xiaomei Zhang, Fengchao Wang, Zhangyin Jin, Xuemei Li, Meng Wen, and John R. Cary, “Generating Monoenergetic Heavy-Ion Bunches with Laser-Induced Electrostatic Shocks”, Phys. Rev. Lett. 101, 164802 (2008). https://doi.org/10.1103/PhysRevLett.101.164802
V. H. Ranjbar and P. Ivanov, “Chromaticity and wakefield effect on the transverse motion of longitudinal bunch slices in the Fermilab Tevatron”, Phys. Rev. ST Accel. Beams 11, 084401 (2008). https://doi.org/10.1103/PhysRevSTAB.11.084401
P. Spentzouris, J. Cary, L. C. McInnes, W. Mori, C. Ng, E. Ng and R. Ryne, “Community petascale project for accelerator science and simulation: advancing computational science for future accelerators and accelerator technologies”, Journal of Physics: Conference Series 125, 012005 (2008). https://doi.org/10.1088/1742-6596/125/1/012005
Bernard Talin, Annette Calisti, James W. Dufty, and Ilya V. Pogorelov, “Electron dynamics at a positive ion”, Phys. Rev. E 77, 036410 (2008). https://doi.org/10.1103/PhysRevE.77.036410
Nong Xiang and John R. Cary, “Second-Harmonic Generation of Electron-Bernstein Waves in an Inhomogeneous Plasma”, Phys. Rev. Lett. 100, 085002 (2008). https://doi.org/10.1103/PhysRevLett.100.085002
C.G.R. Geddes, D. Bruhwiler, J.R. Cary, E. Cormier-Michel, E. Esarey, C.B. Schroeder, W.A. Isaacs, N. Stinus, P. Messmer, A. Hakim, K. Nakamura, A.J. Gonsalves, D. Panasenko, G.R. Plateau, Cs. Toth, B.Nagler, J. van Tilborg, T. Cowan, S. M. Hooker, and W.P. Leemans, “Laser wakefield simulations towards development of compact particle accelerators,” J. Physics: Conf. Series, 78, 012021 (2007). https://doi.org/10.1088/1742-6596/78/1/012021
D. A. Dimitrov, R. E. Giacone, D. L. Bruhwiler, R. Busby, J. R. Cary, C. G. R. Geddes, E. Esarey, and W. P. Leemans, “Coupling of laser energy into plasma channels”, Phys. Plasmas 14, 043105 (2007). https://doi.org/10.1063/1.2721068
Baifei Shen, Yuelin Li, Karoly Nemeth, Hairong Shang, Yong-chul Chae, Robert Soliday, Robert Crowell, Edward Frank, William Gropp, and John Cary, “Electron injection by a nanowire in the bubble regime”, Physics of plasmas 14, 053115 (2007). https://doi.org/10.1063/1.2728773
Baifei Shen, Yuelin Li, M. Y. Yu, and John Cary, “Bubble regime for ion acceleration in a laser-driven plasma”, Physical Review E 76, 055402 (2007). https://doi.org/10.1103/PhysRevE.76.055402
Peter Messmer and David L. Bruhwiler, “Simulating laser pulse propagation and low-frequency wave emission in capillary plasma channel systems with a ponderomotive guiding center model”, Phys. Rev. ST Accel. Beams 9, 031302 (2006). https://doi.org/10.1103/PhysRevSTAB.9.031302
Nong Xiang, John R. Cary, Daniel C. Barnes, and John Carlsson, “Low-noise electromagnetic δf particle-in-cell simulation of electron Bernstein waves”, Phys. Plasmas 13, 062111 (2006). https://doi.org/10.1063/1.2215460
Dan T. Abell, “Numerical Computation of High-Order Transfer Maps for RF Cavities”, Phys. Rev. ST Accel. Beams 9, 052001 (2006). https://doi.org/10.1103/PhysRevSTAB.9.052001
C. G. R. Geddes, Cs. Toth, J. van Tilborg, E. Esarey, C. B. Schroeder, J. Cary, and W. P. Leemans, “Guiding of relativistic laser pulses by preformed plasma channels”, Phys. Rev. Lett. 95, 145002 (2005). https://doi.org/10.1103/PhysRevLett.95.145002
C. G. R. Geddes, Cs. Tóth, J. van Tilborg, E. Esarey, C. B. Schroeder, D. Bruhwiler, C. Nieter, J. Cary, and W. P. Leemans, “Production of high-quality electron bunches by dephasing and beam loading in channeled and unchanneled laser plasma accelerators”, Phys. Plasmas 12, 056709 (2005). https://doi.org/10.1063/1.1882352
J. R. Cary, R. Giacone, C. Nieter, and D. L. Bruhwiler, “Clean beams from laser wake-field accelerators via optical injection with a cleanup pulse”, Phys. Plasmas 12, 056704 (2005). https://doi.org/10.1063/1.1871196
G. Paesold, E. G. Blackman, and P. Messmer, “On particle acceleration and trapping by Poynting flux dominated flows”, Plasma Physics and Controlled Fusion 47, 1925-1947 (2005). https://doi.org/10.1088/0741-3335/47/11/005
Kiran G. Sonnad and John R. Cary, “Control of beam halo formation through nonlinear damping and collimation”, Phys. Rev. ST Accel. Beams 8, 064202 (2005). https://doi.org/10.1103/PhysRevSTAB.8.064202
Jinhyung Lee and John R. Cary, “Longitudinal Cooling of Non neutral Plasma by Energy Exchange”, Phys. Rev. E 71, 036406 (2005). https://doi.org/10.1103/PhysRevE.71.036406
David L. Bruhwiler, Richard Busby, Alexei V. Fedotov, Ilan Ben-Zvi, John R. Cary, Peter Stoltz, Alexey Burov, Vladimir N. Litvinenko, Peter Messmer, Dan T. Abell, and Chet Nieter, “Direct simulation of friction forces for heavy ions interacting with a warm magnetized electron distribution”, AIP Conference Proceedings 773, 394 (2005). https://doi.org/10.1063/1.1949571
Alexei V. Fedotov, Ilan Ben-Zvi, David L. Bruhwiler, Yu. Eidelman, Vladimir N. Litvinenko, N. Malitsky, A. Sidorin I. Meshkov, A. Smirnov, and G. Trubnikov, “Electron cooling dynamics for RHIC”, AIP Conference Proceedings 773, 415 (2005). https://doi.org/10.1063/1.1949575
Cameron G.R. Geddes, Csaba Toth, Jeroen van Tilborg, Eric Esarey, Carl B. Schroeder, David L. Bruhwiler, Chet Nieter, John R. Cary, and Wim P. Leemans, “High-quality electron beams from a laser wakefield accelerator using plasma-channel guiding”, Nature 431, 538-541 (2004). https://doi.org/10.1038/nature02900
Chet Nieter and John R. Cary, “VORPAL: a versatile plasma simulation code”, J. Comp. Phys. 196, 448-473 (2004). https://doi.org/10.1016/j.jcp.2003.11.004
Cameron G.R. Geddes, Csaba Toth, Jeroen van Tilborg, Eric Esarey, Carl B. Schroeder, David L. Bruhwiler, John R. Cary, and Wim Leemans, “Laser guiding at relativistic intensities and wakefield particle acceleration in plasma channels”, AIP Conference Proceedings 737, 521 (2004). https://doi.org/10.1063/1.1842585
P. Messmer, D.L. Bruhwiler, J.R. Cary, and D.A. Dimitrov, “Ion acceleration and wave generation by overdense laser-plasma interaction”, AIP Conference Proceedings 737, 621 (2004). https://doi.org/10.1063/1.1842600
Dimitre A. Dimitrov, David L. Bruhwiler, John R. Cary, Peter Messmer, Cameron G.R. Geddes, Wim Leemans, and Eric Esarey, “Particle-in-cell simulations of intense laser pulses coupling into plasma channels”, AIP Conference Proceedings 737, 469 (2004). https://doi.org/10.1063/1.1842579
R. H. Cohen, A. Friedman, S. M. Lund, A. W. Molvik, E. P. Lee, T. Azevedo, J.-L. Vay, P. Stoltz, and S. Veitzer, “Electron-cloud simulation and theory for high-current heavy-ion beams”, Phys. Rev. ST Accel. Beams 7, 124201 (2004). https://doi.org/10.1103/PhysRevSTAB.7.124201
P. H. Stoltz, S. A. Veitzer, R. H. Cohen, A. W. Molvik, and J.-L. Vay, “Simulation of heavy ion induced electron yield at grazing incidence”, Phys. Rev. ST Accel. Beams 7, 103201 (2004). https://doi.org/10.1103/PhysRevSTAB.7.103201
David L. Bruhwiler, Dimitre A. Dimitrov, John R. Cary, Eric Esarey, Wim Leemans, and Rodolfo E. Giacone, “Particle-in-cell simulations of tunneling ionization effects in plasma-based accelerators”, Phys. Plasmas 10, 2022 (2003). (Invited) https://doi.org/10.1063/1.1566027
David L. Bruhwiler, Rodolfo E. Giacone, John R. Cary, John P. Verboncoeur, Peter Mardahl, Eric Esarey, Wim Leemans, and Brad Shadwick, “Particle-in-cell simulations of plasma accelerators and electron-neutral collisions”, Phys. Rev. ST Accel. Beams 4, 101302 (2001). https://doi.org/10.1103/PhysRevSTAB.4.101302
David L. Bruhwiler and Tasso J. Kaper, “Wavenumber Transport: Scattering of Small-Scale Internal Waves by Large-Scale Wavepackets”, Journal of Fluid Mechanics 289, 379-405 (1995). https://doi.org/10.1017/S0022112095001376
David L. Bruhwiler and John R. Cary, “Dynamics of Particles Trapping and Detrapping in Coherent Wave Packets”, Physical Review E 50, 3949-3961 (1994). https://doi.org/10.1103/PhysRevE.50.3949
Etienne Forest, Michael F. Reusch, David L. Bruhwiler, and Ali Amiry, “The Correct Local Description for Tracking in Rings”, Particle Accelerators 45, 65-94 (1994). https://cds.cern.ch/record/1108291/files/p65.pdf
David L. Bruhwiler and John R. Cary, “Adiabatic Particle Motion in Spatially-Varying Wave Structures”, Particle Accelerators 43, 195-230 (1994). http://cds.cern.ch/record/1108282/files/p195.pdf
David L. Bruhwiler and Ellen G. Zweibel, “Energy Spectrum of Particles Accelerated Near a Magnetic x Line”, Journal of Geophysical Research 97, 10,825-10,830 (1992). https://doi.org/10.1029/92JA00828
David L. Bruhwiler and John R. Cary, “Particle Dynamics in a Large-Amplitude Wave Packet”, Physical Review Letters 68, 255-258 (1992). https://doi.org/10.1103/physrevlett.68.255
David L. Bruhwiler and John R. Cary, “Diffusion of Trajectories in a Simple Hamiltonian System with Slow Periodic Forcing”, Computer Physics Communications 65, 52-56 (1991). https://doi.org/10.1016/0010-4655(91)90153-C
David L. Bruhwiler and John R. Cary, “Diffusion of Particles in a Slowly Modulated Wave”, Physica D 40, 265-282 (1989). https://doi.org/10.1016/0167-2789(89)90067-5

Vacuum Electronics
and Microwave Devices

Andong Yue, Marcus Pearlman, Mike Worthington, John Cipolla, and Jim Browning, “Particle-in-cell simulation of an industrial magnetron with electron population analysis”, Journal of Vacuum Science & Technology B 39, 022201 (2021). https://doi.org/10.1116/6.0000809
P. H. Stoltz, J. W. Luginsland, A. Chap, D. N. Smithe, and J. R. Cary, “A new simple algorithm for space charge limited emission”, Physics of Plasmas 27, 093103 (2020). https://doi.org/10.1063/5.0020781
Ling Li, Kaviya Aranganadin, Hua-Yi Hsu, and Ming-Chieh Lin, “Design and development of field emission based magnetron for industrial applications using conformal finite-difference timedomain particle-in-cell simulations”, J. Vac. Sci. Technol. B 38, 023205 (2020). https://doi.org/10.1116/1.5140723
Ming-Chieh Lin, Stefan Illy, Konstantinos A. Avramidis, Manfred Thumm, and John Jelonnek, “Study on After Cavity Interaction in a 140-GHz Model TE 0, 3 Gyrotron Using 3-D CFDTD PIC Simulation”, IEEE Transactions on Plasma Science 46, 1937-1942 (2018). https://doi.org/10.1109/TPS.2018.2805521
H. Zhang, I. V. Konoplev, G. Doucas, and J. Smith, “Concept of a tunable source of coherent THz radiation driven by a plasma modulated electron beam”, Physics of Plasmas 25, 043111 (2018). https://doi.org/10.1063/1.5017551
Marcus Pearlman and Jim Browning, “Simulation of a Distributed Cathode in a Linear-Format Crossed-Field Amplifier”, IEEE Transactions on Plasma Science 46, 2497-2504 (2018). https://doi.org/10.1109/TPS.2018.2844732
Thomas G. Jenkins and David N. Smithe, “Time-Domain Modeling of RF Antennas and Plasma-Surface Interactions”, EPJ Web of Conferences 157, 03021 (2017). https://doi.org/10.1051/epjconf/201715703021
T. G. Jenkins and D. N. Smithe, “High-Performance Computational Modeling of Plasma-Surface Interactions and RF Antennas”, Proceedings of the 26th IAEA Fusion Energy Conference, TH/P4-34 (2016). https://conferences.iaea.org/event/98/contributions/11689/attachments/5972/7347/Jenkins_IAEA_2016.pdf
S. Fernandez-Gutierrez, J. Browning, M. C. Lin, D. N. Smithe, and J. Watrous, “Dynamic phase-control of a rising sun magnetron using modulated and continuous current”, J. Appl. Phys. 119, 044501 (2016). https://doi.org/10.1063/1.4940376
Sulmer Fernandez-Gutierrez, Jim Browning, Ming-Chieh Lin, David N. Smithe, and Jack Watrous, “Phase-control of a rising sun magnetron using a modulated, addressable, current source”, Journal of Vacuum Science & Technology B 33, 031203 (2015). https://doi.org/10.1116/1.4916631
Thomas G. Jenkins and David N. Smithe, “High-Performance Finite-Difference Time-Domain Simulations of C-Mod and ITER RF Antennas”, AIP Conf. Proc. 1689, 030003 (2015). http://dx.doi.org/10.1063/1.4936468
David N. Smithe, Thomas G. Jenkins, and J. R. King, “Improvements to the ICRH antenna time-domain 3D plasma simulation model”, AIP Conf. Proc. 1689, 050004 (2015). https://doi.org/10.1063/1.4936492
J. Browning, S. Fernandez-Gutierrez, M. C. Lin, D. N. Smithe, and J. Watrous, “Phase control and fast start-up of a magnetron using modulation of an addressable faceted cathode”, Applied Physics Letters 104, 233507 (2014). https://doi.org/10.1063/1.4883395
Sulmer Fernandez-Gutierrez, Jim Browning, Ming-Chieh Lin, David N. Smithe, and Jack Watrous, “Simulation of a rising sun magnetron employing a faceted cathode with a continuous current source”, J. Vac. Sci. Technol. B 32, 061205 (2014). https://doi.org/10.1116/1.4900636
Ming-Chieh Lin, Chuandong Zhou, and David N. Smithe, “An External Circuit Model for 3-D Electromagnetic Particle-In-Cell Simulations,” IEEE Transactions on Electron Devices 61, 1742-1748 (2014). https://doi.org/10.1109/TED.2014.2304715
Ashwini Sawant, Sung Gug Kim, M-C. Lin, Jung Ho Kim, Yongjun Hong, Joonho So, and E. Choi. “Validation of 3-D Time Domain Particle-in-Cell Simulations for Cold Testing a W-Band Gyrotron Cavity”, IEEE Transactions on Plasma Science 42, 3989-3995 (2014). https://doi.org/10.1109/TPS.2014.2366191
Sulmer A. Fernández-Gutierrez, Simulation of a Magnetron Using Discrete Modulated Current Sources, Ph.D. Dissertation, Boise State University, May 2014. https://scholarworks.boisestate.edu/cgi/viewcontent.cgi?article=1865&context=td
Heather Song, Leslie Tekamp, Frank Francisco, Ming-Chieh Lin, Peter H. Stoltz, David Smith, Gil Wong Choi, and Jin Joo Choi, “Integrated Design of a Compact and Lightweight S-Band Traveling-Wave Tube Amplifier for a New Class of Microwave Power Module”, Journal of Electromagnetic Analysis and Applications 5, 96-102 (2013). https://doi.org/10.4236/jemaa.2013.53016
Ming-Chieh Lin, Peter H. Stoltz, David N. Smithe, Hoyoung Song, Hyoung Jong Kim, Jin Joo Choi, Seon Joo Kim, and Sung Hoon Jang, “Design and modeling of multistage depressed collectors by using 3D conformal finite-difference time-domain particle-in-cell simulations”, Journal of the Korean Physical Society 60, 731–738 (2012). https://doi.org/10.3938/jkps.60.731
Travis M Austin, John R Cary, Serguei Ovtchinnikov, Gregory R Werner, and Leo Bellantoni, “Validation of frequency extraction calculations from time-domain simulations of accelerator cavities”, Comput. Sci. Discov. 4, 015004 (2011). https://doi.org/10.1088/1749-4699/4/1/015004
C. R. Douglas, M. C. Lin, P. H. Stoltz, D. N. Smithe, J. S. Lee, and H. Song, “A 3D Analysis of a Microfabricated Ladder Type Slow-Wave Structure for a Millimeter-Wave Traveling-Wave Tube”, IEEE Trans. Electron Devices 57, 3500-3507 (2010). https://doi.org/10.1109/TED.2010.2076381
M. C. Lin, C. Nieter, P. H. Stoltz, and D. N. Smithe, “Accurately and Efficiently Studying the RF Structures Using a Conformal Finite-Difference Time-Domain Particle-in-Cell Method”, The Open Plasma Physics Journal 3, 48-52 (2010). https://doi.org/10.2174/1876534301003010048
C. Prokop, P. Piot, M. C. Lin, and P. Stoltz, “Numerical modeling of a table-top tunable Smith–Purcell terahertz free-electron laser operating in the super-radiant regime”, Applied Physics Letters 96, 151502 (2010). https://doi.org/10.1063/1.3386543
T.M. Austin, J.R. Cary, G. Werner, and L. Bellantoni, “Validation of Broadly Filtered Diagonalization Method for Extracting Frequencies and Modes from High Performance Computations”, J. Phys.: Conf. Ser. 180, 012003 (2009). https://doi.org/10.1088/1742-6596/180/1/012003
K. Tian, G. Cheng, F. Marhauser, H. Wang, and C.D. Zhou, “Benchmark of different electromagnetic codes for the high frequency calculation”, Proceedings of PAC09 , TH5PFP093 (2009). https://accelconf.web.cern.ch/pac2009/papers/th5pfp093.pdf
R. Busby, D. A. Dimitrov, J. R. Cary, I. Ben-Zvi, X. Chang, J. Keister, E. Miller, T. Rao, J. Smedley, and Q. Wu, “3D Simulations of Secondary Electron Generation and Transport in Diamond Electron Beam Amplifiers”, Proceedings of PAC09, FR5PFP081 (2009). https://accelconf.web.cern.ch/PAC2009/papers/fr5pfp081.pdf
D. A. Dimitrov, R. Busby, J. R. Cary, I. Ben-Zvi, X. Chang, J. Keister, E. Muller, T. Rao, J. Smedley, and Q. Wu, “Investigation of Charge Gain in Diamond Electron Beam Amplifiers via 3D Simulations”, In Proceedings of PAC09, FR5PFP082 (2009). https://accelconf.web.cern.ch/pac2009/papers/fr5pfp082.pdf
K. Paul, D. A. Dimitrov, R. Busby, D. L. Bruhwiler, D. Smithe, J. R. Cary, J. Kewisch, D. Kayran, R. Calaga, and I. Ben-Zvi, “Half‐Cell RF Gun Simulations with the Electromagnetic Particle‐in‐Cell Code VORPAL”, AIP Conference Proceedings 1086, 334-339 (2009). https://doi.org/10.1063/1.3080928
Dimitre A. Dimitrov, Richard Busby, John R. Cary, Ilan Ben-Zvi, John Smedley, Xiangyun Chang, Triveni Rao, Jeffrey W. Keister, Erik M. Muller, and Andrew Burrill, “Simulations of Charge Gain and Collection Efficiency from Diamond Amplifiers”, MRS Online Proceedings Library 1203, 1743 (2009). https://doi.org/10.1557/PROC-1203-J17-43
S. O. Cetiner, P. Stoltz, P. Messmer, and J.-L. Cambier, “Dependence of electron peak current on hollow cathode dimensions and seed electron energy in a pseudospark discharge”, J. Appl. Phys. 103, 023304 (2008). https://doi.org/10.1063/1.2832507
S. Mahalingam, J. R. Cary, P. H. Stoltz, and S. A. Veitzer, “Modeling breakdown in RF cavities using Particle-in-Cell (PIC) Codes”, In Proceedings of EPAC08, Genoa, Italy (2008). https://accelconf.web.cern.ch/e08/papers/wepp111.pdf
S. Mahalingam, S. A. Veitzer, and P. H. Stoltz, “Modeling breakdown processes in RF cavities using Particle-in-Cell (PIC) Codes”, In Proceedings of 28th IEEE International Power Modulator and High Voltage Conference, Las Vegas, NV (2008). https://doi.org/10.1109/IPMC.2008.4743640
Seth A. Veitzer and Peter H. Stoltz, “Simulations of electron generation and dynamics in a hollow cathode with applied magnetic field”, Nucl. Instrum. and Meth. in Physics Research Section B 261, 204-208 (2007). https://doi.org/10.1016/j.nimb.2007.04.291

Electromagnetic
and electrostatics

H. Zhang, I. V. Konoplev, G. Doucas, and J. Smith, “Concept of a tunable source of coherent THz radiation driven by a plasma modulated electron beam”, Physics of Plasmas 25, 043111 (2018). https://doi.org/10.1063/1.5017551
Thomas G. Jenkins and David N. Smithe, “Time-Domain Modeling of RF Antennas and Plasma-Surface Interactions”, EPJ Web of Conferences 157, 03021 (2017). https://doi.org/10.1051/epjconf/201715703021
T. G. Jenkins and D. N. Smithe, “High-Performance Computational Modeling of Plasma-Surface Interactions and RF Antennas”, Proceedings of the 26th IAEA Fusion Energy Conference, TH/P4-34 (2016). https://conferences.iaea.org/event/98/contributions/11689/attachments/5972/7347/Jenkins_IAEA_2016.pdf
Alexander Pletzer and David Fillmore, “Conservative interpolation of edge and face data on n dimensional structured grids using differential forms”, Journal of Computational Physics 302, 21-40 (2015). https://doi.org/10.1016/j.jcp.2015.08.029
Thomas G. Jenkins and David N. Smithe, “High-Performance Finite-Difference Time-Domain Simulations of C-Mod and ITER RF Antennas”, AIP Conf. Proc. 1689, 030003 (2015). http://dx.doi.org/10.1063/1.4936468
David N. Smithe, Thomas G. Jenkins, and J. R. King, “Improvements to the ICRH antenna time-domain 3D plasma simulation model”, AIP Conf. Proc. 1689, 050004 (2015). https://doi.org/10.1063/1.4936492
Ming-Chieh Lin, Chuandong Zhou, and David N. Smithe, “An External Circuit Model for 3-D Electromagnetic Particle-In-Cell Simulations,” IEEE Transactions on Electron Devices 61, 1742-1748 (2014). https://doi.org/10.1109/TED.2014.2304715
Hsiang-Hao Wu and Yung-Chiang Lan, “Magnetic lenses of surface magnetoplasmons in semiconductor–glass waveguide arrays”, Applied Physics Express 7, 032203 (2014). https://doi.org/10.7567/APEX.7.032203
Benjamin M. Cowan, David L. Bruhwiler, John R. Cary, Estelle Cormier-Michel, and Cameron G. R. Geddes, “Generalized algorithm for control of numerical dispersion in explicit time-domain electromagnetic simulations”, Phys. Rev. ST Accel. Beams 16, 041303 (2013). https://doi.org/10.1103/PhysRevSTAB.16.041303
Travis M Austin, John R Cary, Serguei Ovtchinnikov, Gregory R Werner, and Leo Bellantoni, “Validation of frequency extraction calculations from time-domain simulations of accelerator cavities”, Comput. Sci. Discov. 4, 015004 (2011). https://doi.org/10.1088/1749-4699/4/1/015004
Carl A.Bauer, Gregory R.Werner, and John R.Cary, “A second-order 3D electromagnetics algorithm for curved interfaces between anisotropic dielectrics on a Yee mesh”, Journal of Computational Physics 230, 2060-2075 (2011). https://doi.org/10.1016/j.jcp.2010.12.005
T.M. Austin, J.R. Cary, D.N. Smithe, and C. Nieter, “Alternating Direction Implicit Methods for FDTD using the Dey-Mittra Embedded Boundary Method”, The Open Plasma Physics Journal 3, 29-35 (2010). https://doi.org/10.2174/1876534301003010029
M. C. Lin, C. Nieter, P. H. Stoltz, and D. N. Smithe, “Accurately and Efficiently Studying the RF Structures Using a Conformal Finite-Difference Time-Domain Particle-in-Cell Method”, The Open Plasma Physics Journal 3, 48-52 (2010). https://doi.org/10.2174/1876534301003010048
David N. Smithe, “Full-Field/Scattered-Field Formulation Containing a Dielectric Interface”, The Open Plasma Physics Journal 3, 60-72 (2010). https://doi.org/10.2174/1876534301003010060
B. M. Cowan, M.-C. Lin, B. T. Schwartz, E. R. Colby, R. J. England, R. J. Noble, J. E. Spencer, R. L. Byer, and C. M. McGuinness, “Compact couplers for photonic crystal laser-driven accelerator structures”, Proceedings of IPAC2010, THPEC013 (2010). https://accelconf.web.cern.ch/IPAC10/papers/thpec013.pdf
C. Prokop, P. Piot, M. C. Lin, and P. Stoltz, “Numerical modeling of a table-top tunable Smith–Purcell terahertz free-electron laser operating in the super-radiant regime”, Applied Physics Letters 96, 151502 (2010). https://doi.org/10.1063/1.3386543
T.M. Austin, J.R. Cary, G. Werner, and L. Bellantoni, “Validation of Broadly Filtered Diagonalization Method for Extracting Frequencies and Modes from High Performance Computations”, J. Phys.: Conf. Ser. 180, 012003 (2009). https://doi.org/10.1088/1742-6596/180/1/012003
K. Tian, G. Cheng, F. Marhauser, H. Wang, and C.D. Zhou, “Benchmark of different electromagnetic codes for the high frequency calculation”, Proceedings of PAC09 , TH5PFP093 (2009). https://accelconf.web.cern.ch/pac2009/papers/th5pfp093.pdf
C.Nieter, John R.Cary, Gregory R. Werner, David N. Smithe, and Peter H. Stoltz, “Application of Dey-Mittra conformal boundary algorithm to 3D electromagnetic modeling”, J. Comp. Phys. 228, 7902-7916 (2009). https://doi.org/10.1016/j.jcp.2009.07.025
David N.Smithe, John R.Cary, and Johan A. Carlsson, “Divergence preservation in the ADI algorithms for electromagnetics”, Journal of Computational Physics 228, 7289-7299 (2009). https://doi.org/10.1016/j.jcp.2009.06.025
G. R Werner, C. A. Bauer, and J. R. Cary, “Wakefields in Photonic Crystal Cavities”, Phys. Rev. ST Accel. Beams 12, 071301 (2009). https://doi.org/10.1103/PhysRevSTAB.12.071301
C. A. Bauer, G. R. Werner, and J. R. Cary, “Truncated photonic crystal cavities with optimized mode confinement”, J. Appl. Phys. 104, 053107 (2008). https://doi.org/10.1063/1.2973669
Gregory R. Werner, John R. Cary, “Extracting degenerate modes and frequencies from time-domain simulations with filter-diagonalization”, Journal of Computational Physics 227, 5200-5214 (2008). https://doi.org/10.1016/j.jcp.2008.01.040
Benjamin M. Cowan, “Three-dimensional dielectric photonic crystal structures for laser-driven acceleration”, Phys. Rev. ST Accel. Beams 11, 011301 (2008). https://doi.org/10.1103/PhysRevSTAB.11.011301
David N. Smithe, “Finite-difference time-domain simulation of fusion plasmas at radiofrequency time scales”, Physics of Plasmas 14, 056104 (2007). http://dx.doi.org/10.1063/1.2710784
John R. Cary and Nong Xiang, “Wave excitation in inhomogeneous dielectric media,” Phys. Rev. E 76, 055401(R) (2007). https://doi.org/10.1103/PhysRevE.76.055401
Gregory R. Werner, John R. Cary, “A Stable FDTD Algorithm for Non-diagonal, Anisotropic Dielectrics,” Journal of Computational Physics 226, 1085-1101 (2007). https://doi.org/10.1016/j.jcp.2007.05.008
Dan T. Abell, “Numerical Computation of High-Order Transfer Maps for RF Cavities”, Phys. Rev. ST Accel. Beams 9, 052001 (2006). https://doi.org/10.1103/PhysRevSTAB.9.052001
Chet Nieter and John R. Cary, “VORPAL: a versatile plasma simulation code”, J. Comp. Phys. 196, 448-473 (2004). https://doi.org/10.1016/j.jcp.2003.11.004
Peter Messmer and David L. Bruhwiler, “A parallel electrostatic solver for the VORPAL code”, Computer Physics Communications 164, 118-121 (2004). https://doi.org/10.1016/j.cpc.2004.06.018
David L. Bruhwiler and Tasso J. Kaper, “Wavenumber Transport: Scattering of Small-Scale Internal Waves by Large-Scale Wavepackets”, Journal of Fluid Mechanics 289, 379-405 (1995). https://doi.org/10.1017/S0022112095001376

USim

A. Y. Pankin, J. R. King, S. E. Kruger, Xi Chen, K. H. Burrell, A. M. Garofalo, R. J. Groebner, G. R. McKee, and Z. Yan, “Towards validated MHD modeling of edge harmonic oscillation in DIII-D QH-mode discharges”, Nucl. Fusion 60, 092004 (2020). https://doi.org/10.1088/1741-4326/ab9afe
J. R. King, R. Masti, B. Srinivasan, and K. Beckwith, “Multidimensional Tests of a Finite-Volume Solver for MHD With a Real-Gas Equation of State”, IEEE Transactions on Plasma Science 48, 902-913 (2020). https://doi.org/10.1109/TPS.2020.2981238
J. R. King, S. E. Kruger, K. H. Burrell, X. Chen, A. M. Garofalo, R. J. Groebner, K. E. J. Olofsson, A. Y. Pankin, and P. B. Snyder, “MHD modeling of a DIII-D low-torque QH-mode discharge and comparison to observations”, Physics of Plasmas 24, 055902 (2017). https://doi.org/10.1063/1.4977467
Madhusudhan Kundrapu, John Loverich, Kristian Beckwith, Peter Stoltz, Alexey Shashurin, and Michael Keidar, “Modeling Radio Communication Blackout and Blackout Mitigation in Hypersonic Vehicles”, Journal of Spacecraft and Rockets 52, 853-862 (2015). https://doi.org/10.2514/1.A33122
K. Beckwith, S. A. Veitzer, S. McCormick, J. Ruge, L. N. Olson, and J. C. Cahoun, “Fully Implicit Ultrascale Physics Solvers and Application to Ion Source Modeling”, IEEE Transactions on Plasma Science 43, 957-964 (2015). https://doi.org/10.1109/TPS.2014.2388151
Seth A. Veitzer, Kristian R. C. Beckwith, Madhusudhan Kundrapu, and Peter H. Stoltz, “Numerical modeling of the SNS H− ion source”, AIP Conference Proceedings 1655, 030004 (2015). https://doi.org/10.1063/1.4916431
A. Shashurin, T. Zhuang, G. Teel, M. Keidar, M. Kundrapu, J. Loverich, I. I. Beilis, and Y. Raitses, “Laboratory Modeling of the Plasma Layer at Hypersonic Flight”, Journal of Spacecraft and Rockets 51, 838-846 (2014). https://doi.org/10.2514/1.A32771
M. Kundrapu, J. Loverich, K. Beckwith, P. Stoltz, A. Shashurin, and M. Keidar, “Electromagnetic wave propagation in the plasma layer of a reentry vehicle”, Proceedings of the IEEE 41st International Conference on Plasma Sciences (ICOPS) held with IEEE International Conference on High-Power Particle Beams (BEAMS), 1-4 (2014). https://doi.org/10.1109/PLASMA.2014.7012766
J. R. King and S. E. Kruger, “A parametric study of the drift-tearing mode using an extended-magnetohydrodynamic model”, Physics of Plasmas 21, 102113 (2014). https://doi.org/10.1063/1.4899036
Thomas G. Jenkins, Travis M. Austin, David N. Smithe, John Loverich, and Ammar H. Hakim, “Time-domain simulation of nonlinear radiofrequency phenomena”, Physics of Plasmas 20, 012116 (2013). https://doi.org/10.1063/1.4776704
Madhusudhan Kundrapu, John Loverich, Kris Beckwith, Peter Stoltz, Michael Keidar, and Tai Sen Zhuang, “Modeling and Simulation of Weakly Ionized Plasmas Using Nautilus”, in Proceedings of the 51st AIAA Aerospace Sciences Meeting including the New Horizons Forum and Aerospace Exposition, AIAA 2013-1187 (2013). https://doi.org/10.2514/6.2013-1187
John Loverich, Sean C. D Zhou, Kris Beckwith, Madhusudhan Kundrapu, Mike Loh, Sudhakar Mahalingam, Peter Stoltz and Ammar Hakim, “Nautilus: A Tool For Modeling Fluid Plasmas”, in Proceedings of the 51st AIAA Aerospace Sciences Meeting including the New Horizons Forum and Aerospace Exposition, AIAA 2013-1185 (2013). https://doi.org/10.2514/6.2013-1185
Elizabeth C. Merritt, Auna L. Moser, Scott C. Hsu, John Loverich, and Mark Gilmore, “Experimental Characterization of the Stagnation Layer between Two Obliquely Merging Supersonic Plasma Jets”, Physical Review Letters 111, 085003 (2013). https://doi.org/10.1103/PhysRevLett.111.085003
M. G. Schlutt, C. C. Hegna, C. R. Sovinec, E. D. Held, and S. E. Kruger, “Self-consistent simulations of nonlinear magnetohydrodynamics and profile evolution in stellarator configurations”, Physics of Plasmas 20, 056104 (2013). https://doi.org/10.1063/1.4802834
Elizabeth C. Merritt, Alan G. Lynn, Mark A. Gilmore, Carsten Thoma, John Loverich, and Scott C. Hsu, “Multi-chord fiber-coupled interferometry of supersonic plasma jets”, Review of Scientific Instruments 83, 10D523 (2012). (invited) https://doi.org/10.1063/1.4734496
John Loverich, Ammar Hakim, Uri Shumlak, “A Discontinuous Galerkin Method for Ideal Two-Fluid Plasma Equations”, Communications in Computational Physics 9, 240-268 (2011). https://doi.org/10.4208/cicp.250509.210610a
J. Loverich and A. Hakim, “Two-Dimensional Modeling of Ideal Merging Plasma Jets”, Journal of Fusion Energy 29, 532–539 (2010). https://doi.org/10.1007/s10894-010-9321-z
Ammar H. Hakim, “Extended MHD modelling with the ten-moment equations”, Journal of Fusion Energy 27, 36-43 (2008). https://doi.org/10.1007/s10894-007-9116-z
A. Hakim, J. Loverich, and U. Shumlak, “A high resolution wave propagation scheme for ideal Two-Fluid plasma equations”, Journal of Computational Physics 219, 418-442 (2006). https://doi.org/10.1016/j.jcp.2006.03.036

PSim

Jyoti P. Mahalik, Wei Li, Andrei T. Savici, Steven Hahn, Hans Lauter, Haile Ambaye, Bobby G. Sumpter, Valeria Lauter, and Rajeev Kumar, “Dispersity-Driven Stabilization of Coexisting Morphologies in Asymmetric Diblock Copolymer Thin Films”, Macromolecules 54, 450–459 (2021). https://doi.org/10.1021/acs.macromol.0c01722
Hao Mei, Travis S. Laws, Jyoti P. Mahalik, Jiabei Li, Adeline H. Mah, Tanguy Terlier, Peter Bonnesen, David Uhrig, Rajeev Kumar, Gila E. Stein, and Rafael Verduzco, “Entropy and Enthalpy Mediated Segregation of Bottlebrush Copolymers to Interfaces”, Macromolecules 52, 8910–8922 (2019). https://doi.org/10.1021/acs.macromol.9b01801
Wei Li, Jan-Michael Y. Carrillo, John Katsaras, Bobby G. Sumpter, Rana Ashkar, and Rajeev Kumar, “The influence of curvature on domain distribution in binary mixture membranes”, Soft Matter 15, 6642-6649 (2019). https://doi.org/10.1039/C9SM01262A
Adeline Huizhen Mah, Travis Laws, Wei Li, Hao Mei, Chance C. Brown, Anton Ievlev, Rajeev Kumar, Rafael Verduzco, and Gila E. Stein, “Entropic and Enthalpic Effects in Thin Film Blends of Homopolymers and Bottlebrush Polymers”, Macromolecules 52, 1526–1535 (2019). https://doi.org/10.1021/acs.macromol.8b02242
Hyeyoung Kim, Matthias M. L. Arras, J. P. Mahalik, Weiyu Wang, Duk Man Yu, Sergey Chernyy, Monojoy Goswami, Rajeev Kumar, Bobby G. Sumpter, Kunlun Hong, Gregory S. Smith, and Thomas P. Russell, “Studies on the 3-Lamellar Morphology of Miktoarm Terpolymers”, Macromolecules 51, 7491–7499 (2018). https://doi.org/10.1021/acs.macromol.8b01548
Jyoti P. Mahalik, Jason W. Dugger, Scott W. Sides, Bobby G. Sumpter, Valeria Lauter, and Rajeev Kumar, “Interpreting Neutron Reflectivity Profiles of Diblock Copolymer Nanocomposite Thin Films Using Hybrid Particle-Field Simulations”, Macromolecules 51, 3116–3125 (2018). https://doi.org/10.1021/acs.macromol.8b00180
Sergey Chernyy, Jacob Judas Kain Kirkensgaard, Jyoti P. Mahalik, Hyeyoung Kim, Matthias M. L. Arras, Rajeev Kumar, Bobby G. Sumpter, Gregory S. Smith, Kell Mortensen, Thomas P. Russell, and Kristoffer Almdal, “Bulk and Surface Morphologies of ABC Miktoarm Star Terpolymers Composed of PDMS, PI, and PMMA Arms”, Macromolecules 51, 1041–1051 (2018). https://doi.org/10.1021/acs.macromol.7b02485
Jonathan R. Brown, Youngmi Seo, Scott W. Sides, and Lisa M. Hall, “Unique Phase Behavior of Inverse Tapered Block Copolymers: Self-Consistent Field Theory and Molecular Dynamics Simulations”, Macromolecules 50, 5619–5626 (2017). https://doi.org/10.1021/acs.macromol.7b00522
Rajeev Kumar, Bradley S. Lokitz, Scott W. Sides, Jihua Chen, William T. Heller, John F. Ankner, James F. Browning, S. Michael Kilbey II, and Bobby G. Sumpter, “Microphase separation in thin films of lamellar forming polydisperse di-block copolymers”, RSC Advances 5, 21336-21348 (2015). https://doi.org/10.1039/C5RA00974J
Jonathan R. Brown, Scott W. Sides, and Lisa M. Hall, “Phase Behavior of Tapered Diblock Copolymers from Self-Consistent Field Theory”, ACS Macro Lett. 2, 1105–1109 (2013). https://doi.org/10.1021/mz400546h
Rajeev Kumar, Scott W. Sides, Monojoy Goswami, Bobby G. Sumpter, Kunlun Hong, Xiaodong Wu, Thomas P. Russell, Samuel P. Gido, Konstantinos Misichronis, Sofia Rangou, Apostolos Avgeropoulos, Thodoris Tsoukatos, Nikos Hadjichristidis, Frederick L. Beyer, and Jimmy W. Mays, “Morphologies of ABC Triblock Terpolymer Melts Containing Poly(Cyclohexadiene): Effects of Conformational Asymmetry”, Langmuir 29, 1995–2006 (2013). https://doi.org/10.1021/la304576c
C. Dyer, P. Driva, S. W. Sides, B. G. Sumpter, J. W. Mays, J. Chen, R. Kumar, M. Goswami, and M. D. Dadmun, “Effect of Macromolecular Architecture on the Morphology of Polystyrene–Polyisoprene Block Copolymers”, Macromolecules 46, 2023–2031 (2013). https://doi.org/10.1021/ma202650a
Jingwen Zhang, Scott Sides, and Frank S. Bates, “Ordering of Sphere Forming SISO Tetrablock Terpolymers on a Simple Hexagonal Lattice”, Macromolecules 45, 256–265 (2012). https://doi.org/10.1021/ma202196c
G. Singh, M. M. Kulkarni, D. Smilgies, S. Sides, B. Berry, D. Raghavan, D.G. Bucknall, B. Sumpter, and A. Karim, “Directed Assembly of Model Block Copolymer-PCBM Blend System for Photovoltaic Applications”, MRS Online Proceedings Library 1390, 00443 (2012). https://doi.org/10.1557/opl.2012.443
Rajeev Kumar, Yige Li, Scott W Sides, Jimmy W Mays, and Bobby G Sumpter, “Morphology diagrams for A2B copolymer melts: real-space self-consistent field theory”, J. Phys.: Conf. Ser. 402, 012042 (2012). https://doi.org/10.1088/1742-6596/402/1/012042
David G. Bucknall, Gabriel Bernardo, Meisha L. Shofner, Deb Nabankur, Dharmaraj Raghavan, Bobby G. Sumpter, Scott Sides, Abul Huq, and Alamgir Karim, “Phase Morphology and Molecular Structure Correlations in Model Fullerene-Polymer Nanocomposites”, Materials Science Forum 714, 63–66 (2012). https://doi.org/10.4028/www.scientific.net/MSF.714.63
Scott W. Sides, Bumjoon J. Kim, Edward J. Kramer, and Glenn H. Fredrickson. “Hybrid particle-field simulations of polymer nanocomposites”, Phys. Rev. Lett. 96, 250601 (2006). https://doi.org/10.1103/PhysRevLett.96.250601

2021 PUBLICATIONS

Thomas G. Jenkins, Gregory R. Werner, and John R. Cary, “Dispersion and the speed-limited particle-in-cell algorithm”, Phys. Plasmas 28, 062107 (2021). http://doi.org/10.1063/5.0046935
Joseph G. Theis, Gregory R. Werner, Thomas G. Jenkins, and John R. Cary, “Computing the Paschen curve for argon with speed-limited particle-in-cell simulation”, Phys. Plasmas 28, 063513 (2021). https://doi.org/10.1063/5.0051095
J. R. Myra, M. T. Elias, D. Curreli, and T. G. Jenkins, “Effect of net direct current on the properties of radio frequency sheaths: simulation and cross-code comparison”, Nucl. Fusion 61, 016030 (2021). https://doi.org/10.1088/1741-4326/abc4c4
Andong Yue, Marcus Pearlman, Mike Worthington, John Cipolla, and Jim Browning, “Particle-in-cell simulation of an industrial magnetron with electron population analysis”, Journal of Vacuum Science & Technology B 39, 022201 (2021). https://doi.org/10.1116/6.0000809

2020 PUBLICATIONS

P. H. Stoltz, J. W. Luginsland, A. Chap, D. N. Smithe, and J. R. Cary, “A new simple algorithm for space charge limited emission”, Physics of Plasmas 27, 093103 (2020). https://doi.org/10.1063/5.0020781
A. Y. Pankin, J. R. King, S. E. Kruger, Xi Chen, K. H. Burrell, A. M. Garofalo, R. J. Groebner, G. R. McKee, and Z. Yan, “Towards validated MHD modeling of edge harmonic oscillation in DIII-D QH-mode discharges”, Nucl. Fusion 60, 092004 (2020). https://doi.org/10.1088/1741-4326/ab9afe
J. R. King, R. Masti, B. Srinivasan, and K. Beckwith, “Multidimensional Tests of a Finite-Volume Solver for MHD With a Real-Gas Equation of State”, IEEE Transactions on Plasma Science 48, 902-913 (2020). https://doi.org/10.1109/TPS.2020.2981238
J. R. Myra, D. Curreli, M. T. Elias, and T. G. Jenkins, “Recent progress in microscale modeling of RF sheaths”, AIP Conference Proceedings 2254, 050008 (2020). https://doi.org/10.1063/5.0013522

2019 PUBLICATIONS

M. Elias, D. Curreli, T. G. Jenkins, J. R. Myra, and J. Wright, “Numerical model of the radio-frequency magnetic presheath including wall impurities”, Phys. Plasmas 26, 092508 (2019); https://doi.org/10.1063/1.5109256
L Couëdel, D Artis, M P Khanal, C Pardanaud, S Coussan, S LeBlanc, T Hall, E Thomas Jr, U Konopka, M Park, and C Arnas, “Influence of magnetic field strength on nanoparticle growth in a capacitively-coupled radio-frequency Ar/C2H2 discharge”, Plasma Research Express 1, 015012 (2019). https://doi.org/10.1088/2516-1067/ab045e
J. R. King, I. V. Pogorelov, K. M. Amyx, M. Borland, and R. Soliday, “GPU acceleration and performance of the particle-beam-dynamics code Elegant”, Computer Physics Communications 235, 346-355 (2019). https://doi.org/10.1016/j.cpc.2018.09.022
T. G. Jenkins, A. M. Chap, G. R. Werner, and J. R. Cary, “Speed-Limited Particle-in-Cell Modeling of Low-Temperature Plasma Discharges”, Proceedings of the 22nd IEEE International Pulsed Power Conference, Orlando, Florida, 1-4 (2019). https://doi.org/10.1109/PPPS34859.2019.9009692
N. Crossette, T. G. Jenkins, J. R. Cary, J. Leddy, and D. N. Smithe, “Determination of First Townsend Ionization Coefficient by Simulation”, Proceedings of the 22nd IEEE International Pulsed Power Conference, Orlando, Florida, 1-3 (2019). https://doi.org/10.1109/PPPS34859.2019.9009919

2018 PUBLICATIONS

Marcus Pearlman and Jim Browning, “Simulation of a Distributed Cathode in a Linear-Format Crossed-Field Amplifier”, IEEE Transactions on Plasma Science 46, 2497-2504 (2018). https://doi.org/10.1109/TPS.2018.2844732
Zsolt Lécz, Alexander Andreev, Ivan Konoplev, Andrei Seryi, and Jonathan Smith, “Trains of electron micro-bunches in plasma wake-field acceleration”, Plasma Physics and Controlled Fusion 60, 075012 (2018). https://doi.org/10.1088/1361-6587/aac064
Zs. Lécz, A. Andreev, A. Seryi, I. Konoplev, and Jonathan Smith, “Self-injection of multiple electron microbunches into a beam-driven plasma bubble”, in Proceedings of the 45th EPS Conference on Plasma Physics, P2-2023 (2018). http://ocs.ciemat.es/EPS2018PAP/pdf/P2.2023.pdf
Y. Martinez Palenzuela, B.A. Marsh, J. Ballof, R. Catherall, K. Chrysalidis, T.E. Cocolios, B. Crepieux, T. Day Goodacre, V.N. Fedosseev, M.H. Huyse, P.B. Larmonier, J.P. Ramos, S. Rothe, J.D.A. Smith, T. Stora, P. Van Duppen, and S. Wilkins, “Enhancing the extraction of laser-ionized beams from an arc discharge ion source volume”, Nuclear Instruments and Methods in Physics Research Section B 431, 59-66 (2018). https://doi.org/10.1016/j.nimb.2018.06.006
H. Zhang, I. V. Konoplev, G. Doucas, and J. Smith, “Concept of a tunable source of coherent THz radiation driven by a plasma modulated electron beam”, Physics of Plasmas 25, 043111 (2018). https://doi.org/10.1063/1.5017551
Gregory R. Werner, Thomas G. Jenkins, Andrew M. Chap, and John R. Cary, “Speeding up simulations by slowing down particles: Speed-limited particle-in-cell simulation”, Phys. Plasmas 25, 123512 (2018). http://dx.doi.org/10.1063/1.5061683
Jyoti P. Mahalik, Jason W. Dugger, Scott W. Sides, Bobby G. Sumpter, Valeria Lauter, and Rajeev Kumar, “Interpreting Neutron Reflectivity Profiles of Diblock Copolymer Nanocomposite Thin Films Using Hybrid Particle-Field Simulations”, Macromolecules 51, 3116–3125 (2018). https://doi.org/10.1021/acs.macromol.8b00180

2017 PUBLICATIONS

Bernhard Hidding, Erik Adli, Gerard Andonian, Andrew Beaton, David Bruhwiler, John Cary, Christine Clarke et al., “First Measurements of Trojan Horse Injection in a Plasma Wakefield Accelerator”, Proceedings of IPAC2017, TUYB1 (2017). https://accelconf.web.cern.ch/IPAC2017/papers/tuyb1.pdf
Adam V. Higuera and John R. Cary, “Structure-preserving second-order integration of relativistic charged particle trajectories in electromagnetic fields”, Physics of Plasmas 24, 052104 (2017). https://doi.org/10.1063/1.4979989
J. R. King, S. E. Kruger, R. J. Groebner, J. D. Hanson, J. D. Hebert, E. D. Held, and J. R. Jepson, “Effect of scrape-off-layer current on reconstructed tokamak equilibrium”, Physics of Plasmas 24, 012504 (2017). https://doi.org/10.1063/1.4972822
Y. Wei, S. Jamison, G. Xia, K. Hanahoe, Y. Li, J. D. A. Smith, and C. P. Welsch, “Beam quality study for a grating-based dielectric laser-driven accelerator”, Physics of Plasmas 24, 023102 (2017). https://doi.org/10.1063/1.4975080
Y. Wei, G. Xia, J. D. A. Smith, and C. P. Welsch, “Dual-gratings with a Bragg reflector for dielectric laser-driven accelerators”, Physics of Plasmas 24, 073115 (2017). https://doi.org/10.1063/1.4993206
J. R. King, S. E. Kruger, K. H. Burrell, X. Chen, A. M. Garofalo, R. J. Groebner, K. E. J. Olofsson, A. Y. Pankin, and P. B. Snyder, “MHD modeling of a DIII-D low-torque QH-mode discharge and comparison to observations”, Physics of Plasmas 24, 055902 (2017). https://doi.org/10.1063/1.4977467
Thomas G. Jenkins and David N. Smithe, “Time-Domain Modeling of RF Antennas and Plasma-Surface Interactions”, EPJ Web of Conferences 157, 03021 (2017). https://doi.org/10.1051/epjconf/201715703021
Jonathan R. Brown, Youngmi Seo, Scott W. Sides, and Lisa M. Hall, “Unique Phase Behavior of Inverse Tapered Block Copolymers: Self-Consistent Field Theory and Molecular Dynamics Simulations”, Macromolecules 50, 5619–5626 (2017). https://doi.org/10.1021/acs.macromol.7b00522

2016 PUBLICATIONS

J. R. Cary, D. T. Abell, G. I. Bell, B. M. Cowan, J. R. King, D. Meiser, I. V. Pogorelov, and G. R. Werner, “Select Advances in Computational Accelerator Physics”, IEEE Transactions on Nuclear Science 63, 823-841 (2016). https://doi.org/10.1109/TNS.2015.2500686
T. G. Jenkins and D. N. Smithe, “High-Performance Computational Modeling of Plasma-Surface Interactions and RF Antennas”, Proceedings of the 26th IAEA Fusion Energy Conference, TH/P4-34 (2016). https://conferences.iaea.org/event/98/contributions/11689/attachments/5972/7347/Jenkins_IAEA_2016.pdf
J. R. King, A. Y. Pankin, S. E. Kruger, and P. B. Snyder, “The impact of collisionality, FLR, and parallel closure effects on instabilities in the tokamak pedestal: Numerical studies with the NIMROD code”, Physics of Plasmas 23, 062123 (2016). https://doi.org/10.1063/1.4954302
J.R. King, K.H. Burrell, A.M. Garofalo, R.J. Groebner, S.E. Kruger, A.Y. Pankin, and P.B. Snyder, “NIMROD modeling of quiescent H-mode: reconstruction considerations and saturation mechanism”, Nuclear Fusion, 57, 022002 (2016). https://doi.org/10.1088/0029-5515/57/2/022002
S. Fernandez-Gutierrez, J. Browning, M. C. Lin, D. N. Smithe, and J. Watrous, “Dynamic phase-control of a rising sun magnetron using modulated and continuous current”, J. Appl. Phys. 119, 044501 (2016). https://doi.org/10.1063/1.4940376

2015 PUBLICATIONS

A. Y. Pankin, T. Rafiq, A. H. Kritz, G. Y. Park, C. S. Chang, D. Brunner, R. J. Groebner, J. W. Hughes, B. LaBombard, J. L. Terry, and S. Ku, “Kinetic modeling of divertor heat load fluxes in the Alcator C-Mod and DIII-D tokamaks”, Physics of Plasmas 22, 092511 (2015). https://doi.org/10.1063/1.4931050
Alexander Pletzer and David Fillmore, “Conservative interpolation of edge and face data on n dimensional structured grids using differential forms”, Journal of Computational Physics 302, 21-40 (2015). https://doi.org/10.1016/j.jcp.2015.08.029
Thomas G. Jenkins and Eric D. Held, “Coupling extended magnetohydrodynamic fluid codes with radiofrequency ray tracing codes for fusion modeling”, Journal of Computational Physics 297, 427-441 (2015). https://doi.org/10.1016/j.jcp.2015.05.035
T. G. Jenkins and D. N. Smithe, “Benchmarking sheath subgrid boundary conditions for macroscopic-scale simulations”, Plasma Sources Science and Technology 24, 015020 (2015). https://doi.org/10.1088/0963-0252/24/1/015020
Sulmer Fernandez-Gutierrez, Jim Browning, Ming-Chieh Lin, David N. Smithe, and Jack Watrous, “Phase-control of a rising sun magnetron using a modulated, addressable, current source”, Journal of Vacuum Science & Technology B 33, 031203 (2015). https://doi.org/10.1116/1.4916631
Kiran G. Sonnad and John R. Cary, “Near equilibrium distributions for beams with space charge in linear and nonlinear periodic focusing systems”, Physics of Plasmas 22, 043120 (2015). https://doi.org/10.1063/1.4919033
Thomas G. Jenkins and David N. Smithe, “High-Performance Finite-Difference Time-Domain Simulations of C-Mod and ITER RF Antennas”, AIP Conf. Proc. 1689, 030003 (2015). http://dx.doi.org/10.1063/1.4936468
David N. Smithe, Thomas G. Jenkins, and J. R. King, “Improvements to the ICRH antenna time-domain 3D plasma simulation model”, AIP Conf. Proc. 1689, 050004 (2015). https://doi.org/10.1063/1.4936492
Madhusudhan Kundrapu, John Loverich, Kristian Beckwith, Peter Stoltz, Alexey Shashurin, and Michael Keidar, “Modeling Radio Communication Blackout and Blackout Mitigation in Hypersonic Vehicles”, Journal of Spacecraft and Rockets 52, 853-862 (2015). https://doi.org/10.2514/1.A33122
K. Beckwith, S. A. Veitzer, S. McCormick, J. Ruge, L. N. Olson, and J. C. Cahoun, “Fully Implicit Ultrascale Physics Solvers and Application to Ion Source Modeling”, IEEE Transactions on Plasma Science 43, 957-964 (2015). https://doi.org/10.1109/TPS.2014.2388151
Seth A. Veitzer, Kristian R. C. Beckwith, Madhusudhan Kundrapu, and Peter H. Stoltz, “Numerical modeling of the SNS H− ion source”, AIP Conference Proceedings 1655, 030004 (2015). https://doi.org/10.1063/1.4916431
Rajeev Kumar, Bradley S. Lokitz, Scott W. Sides, Jihua Chen, William T. Heller, John F. Ankner, James F. Browning, S. Michael Kilbey II, and Bobby G. Sumpter, “Microphase separation in thin films of lamellar forming polydisperse di-block copolymers”, RSC Advances 5, 21336-21348 (2015). https://doi.org/10.1039/C5RA00974J

2014 PUBLICATIONS

J. R. King and S. E. Kruger, “A parametric study of the drift-tearing mode using an extended-magnetohydrodynamic model”, Physics of Plasmas 21, 102113 (2014). https://doi.org/10.1063/1.4899036
J. Browning, S. Fernandez-Gutierrez, M. C. Lin, D. N. Smithe, and J. Watrous, “Phase control and fast start-up of a magnetron using modulation of an addressable faceted cathode”, Applied Physics Letters 104, 233507 (2014). https://doi.org/10.1063/1.4883395
Sulmer Fernandez-Gutierrez, Jim Browning, Ming-Chieh Lin, David N. Smithe, and Jack Watrous, “Simulation of a rising sun magnetron employing a faceted cathode with a continuous current source”, J. Vac. Sci. Technol. B 32, 061205 (2014). https://doi.org/10.1116/1.4900636
Kiran G. Sonnad, Kenneth C. Hammond, Robert M. Schwartz, and Seth A. Veitzer, “Simulation and analysis of TE wave propagation for measurement of electron cloud densities in particle accelerators”, Nuclear Instruments and Methods in Physics Research Section A 754, 83-93 (2014). https://doi.org/10.1016/j.nima.2014.03.052
Ming-Chieh Lin, Chuandong Zhou, and David N. Smithe, “An External Circuit Model for 3-D Electromagnetic Particle-In-Cell Simulations,” IEEE Transactions on Electron Devices 61, 1742-1748 (2014). https://doi.org/10.1109/TED.2014.2304715
T. G. Jenkins and D. N. Smithe, “RF models for plasma-surface interactions: Sheath boundary conditions with dielectrics,” Proceedings of the IEEE 41st International Conference on Plasma Sciences (ICOPS) held with 2014 IEEE International Conference on High-Power Particle Beams (BEAMS), 1-6 (2014). https://doi.org/10.1109/PLASMA.2014.7012772
S. P. Muszala, G. Alaghband, J. J. Hack, and D. Connors , “Natural Load Indices (NLI) in NAMD2 load balancing algorithms”, NCAR Technical Notes, No. NCAR/TN-511+STR (2014). https://doi.org/10.5065/D6TD9V99
B Hidding, G G Manahan, O Karger, A Knetsch, G Wittig, D A Jaroszynski, Z-M Sheng, Y Xi, A Deng, J B Rosenzweig, G Andonian, A Murokh, G Pretzler, D L Bruhwiler, and J Smith, “Ultrahigh brightness bunches from hybrid plasma accelerators as drivers of 5th generation light sources”, J. Phys. B: At. Mol. Opt. Phys. 47, 234010 (2014). https://doi.org/10.1088/0953-4075/47/23/234010
G. Xia, D. Angal-Kalinin, J. Clarke, J. Smith, E. Cormier-Michel, J. Jones, P.H. Williams, J.W. Mckenzie, B.L. Militsyn, K. Hanahoe, O. Mete, A. Aimidula, and C.P. Welsch, “A plasma wakefield acceleration experiment using CLARA beam”, Nuclear Instruments and Methods in Physics Research Section A 740, 165-172 (2014). https://doi.org/10.1016/j.nima.2013.10.092
A. Shashurin, T. Zhuang, G. Teel, M. Keidar, M. Kundrapu, J. Loverich, I. I. Beilis, and Y. Raitses, “Laboratory Modeling of the Plasma Layer at Hypersonic Flight”, Journal of Spacecraft and Rockets 51, 838-846 (2014). https://doi.org/10.2514/1.A32771
M. Kundrapu, J. Loverich, K. Beckwith, P. Stoltz, A. Shashurin, and M. Keidar, “Electromagnetic wave propagation in the plasma layer of a reentry vehicle”, Proceedings of the IEEE 41st International Conference on Plasma Sciences (ICOPS) held with IEEE International Conference on High-Power Particle Beams (BEAMS), 1-4 (2014). https://doi.org/10.1109/PLASMA.2014.7012766

2013 PUBLICATIONS

S. A. McGee, D. Meiser, C. A. Regal, K. W. Lehnert, and M. J. Holland, “Mechanical resonators for storage and transfer of electrical and optical quantum states”, Physical Review A 87, 053818 (2013). https://doi.org/10.1103/PhysRevA.87.053818
Thomas G. Jenkins, Travis M. Austin, David N. Smithe, John Loverich, and Ammar H. Hakim, “Time-domain simulation of nonlinear radiofrequency phenomena”, Physics of Plasmas 20, 012116 (2013). https://doi.org/10.1063/1.4776704
M. G. Schlutt, C. C. Hegna, C. R. Sovinec, E. D. Held, and S. E. Kruger, “Self-consistent simulations of nonlinear magnetohydrodynamics and profile evolution in stellarator configurations”, Physics of Plasmas 20, 056104 (2013). https://doi.org/10.1063/1.4802834
Paul L.G. Lebrun, James F. Amundson, Panagiotis G. Spentzouris, Seth A. Veitzer, and Peter Stoltz, “Simulation of the Electron Flux into the Main Injector Electron Cloud Retarding Field Analyzer Using Vorpal”, The Open Plasma Physics Journal 6, 1-5 (2013). https://doi.org/10.2174/1876534301306010001
Heather Song, Leslie Tekamp, Frank Francisco, Ming-Chieh Lin, Peter H. Stoltz, David Smith, Gil Wong Choi, and Jin Joo Choi, “Integrated Design of a Compact and Lightweight S-Band Traveling-Wave Tube Amplifier for a New Class of Microwave Power Module”, Journal of Electromagnetic Analysis and Applications 5, 96-102 (2013). https://doi.org/10.4236/jemaa.2013.53016
Benjamin M. Cowan, David L. Bruhwiler, John R. Cary, Estelle Cormier-Michel, and Cameron G. R. Geddes, “Generalized algorithm for control of numerical dispersion in explicit time-domain electromagnetic simulations”, Phys. Rev. ST Accel. Beams 16, 041303 (2013). https://doi.org/10.1103/PhysRevSTAB.16.041303
Y. Xi, B. Hidding, D. Bruhwiler, G. Pretzler, and J. B. Rosenzweig, “Hybrid modeling of relativistic underdense plasma photocathode injectors”, Phys. Rev. ST Accel. Beams 16, 031303 (2013). https://doi.org/10.1103/PhysRevSTAB.16.031303
Madhusudhan Kundrapu, John Loverich, Kris Beckwith, Peter Stoltz, Michael Keidar, and Tai Sen Zhuang, “Modeling and Simulation of Weakly Ionized Plasmas Using Nautilus”, in Proceedings of the 51st AIAA Aerospace Sciences Meeting including the New Horizons Forum and Aerospace Exposition, AIAA 2013-1187 (2013). https://doi.org/10.2514/6.2013-1187
John Loverich, Sean C. D Zhou, Kris Beckwith, Madhusudhan Kundrapu, Mike Loh, Sudhakar Mahalingam, Peter Stoltz and Ammar Hakim, “Nautilus: A Tool For Modeling Fluid Plasmas”, in Proceedings of the 51st AIAA Aerospace Sciences Meeting including the New Horizons Forum and Aerospace Exposition, AIAA 2013-1185 (2013). https://doi.org/10.2514/6.2013-1185
Elizabeth C. Merritt, Auna L. Moser, Scott C. Hsu, John Loverich, and Mark Gilmore, “Experimental Characterization of the Stagnation Layer between Two Obliquely Merging Supersonic Plasma Jets”, Physical Review Letters 111, 085003 (2013). https://doi.org/10.1103/PhysRevLett.111.085003
Jonathan R. Brown, Scott W. Sides, and Lisa M. Hall, “Phase Behavior of Tapered Diblock Copolymers from Self-Consistent Field Theory”, ACS Macro Lett. 2, 1105–1109 (2013). https://doi.org/10.1021/mz400546h
Rajeev Kumar, Scott W. Sides, Monojoy Goswami, Bobby G. Sumpter, Kunlun Hong, Xiaodong Wu, Thomas P. Russell, Samuel P. Gido, Konstantinos Misichronis, Sofia Rangou, Apostolos Avgeropoulos, Thodoris Tsoukatos, Nikos Hadjichristidis, Frederick L. Beyer, and Jimmy W. Mays, “Morphologies of ABC Triblock Terpolymer Melts Containing Poly(Cyclohexadiene): Effects of Conformational Asymmetry”, Langmuir 29, 1995–2006 (2013). https://doi.org/10.1021/la304576c
C. Dyer, P. Driva, S. W. Sides, B. G. Sumpter, J. W. Mays, J. Chen, R. Kumar, M. Goswami, and M. D. Dadmun, “Effect of Macromolecular Architecture on the Morphology of Polystyrene–Polyisoprene Block Copolymers”, Macromolecules 46, 2023–2031 (2013). https://doi.org/10.1021/ma202650a

2012 PUBLICATIONS

Travis M. Austin, Marian Brezina, Thomas A. Manteuffel, and John Ruge, “Automatic Construction of Sparse Preconditioners for High-Order Finite Element Methods”, Efficient Preconditioned Solution Methods for Elliptic Partial Differential Equations, ISBN: 978-1-60805-610-1, 84-102 (2012). https://doi.org/10.2174/978160805291211101010084
B. Hidding, G. Pretzler, J. B. Rosenzweig, T. Königstein, D. Schiller, and D. L. Bruhwiler, “Ultracold Electron Bunch Generation via Plasma Photocathode Emission and Acceleration in a Beam-Driven Plasma Blowout”, Phys. Rev. Lett. 108, 035001 (2012). https://doi.org/10.1103/PhysRevLett.108.035001
P. Piot, C. Behrens, C. Gerth, M. Dohlus, F. Lemery, D. Mihalcea, P. Stoltz, and M. Vogt, “Generation and Characterization of Electron Bunches with Ramped Current Profiles in a Dual-Frequency Superconducting Linear Accelerator”, Phys. Rev. Lett. 108, 229902 (2012). https://doi.org/10.1103/PhysRevLett.108.034801
Andrew R. Poppea, Marcus Piquette, Alexandre Likhanskii, and Mihály Horányi, ” The Effect of Surface Topography on the Lunar Photoelectron Sheath and Electrostatic Dust Transport”, Icarus 221, 135-146 (2012). https://doi.org/10.1016/j.icarus.2012.07.018
Thomas G. Jenkins and Scott E. Kruger, “Fluid equations in the presence of electron cyclotron current drive”, Phys. Plasmas 19, 122508 (2012). https://doi.org/10.1063/1.4773211
Jingwen Zhang, Scott Sides, and Frank S. Bates, “Ordering of Sphere Forming SISO Tetrablock Terpolymers on a Simple Hexagonal Lattice”, Macromolecules 45, 256–265 (2012). https://doi.org/10.1021/ma202196c
S. E. Kruger, T. G. Jenkins, E. D. Held, J. J. Ramos, J. King, D. D. Schnack, and R. W. Harvey, “Coupled Simulations of RF Effects on Tearing Modes”, Proceedings of the 24th International Conference on Plasma Physics and Controlled Nuclear Fusion Research, IAEA, San Diego, California, USA, TH/P3-11 (2012). http://www-naweb.iaea.org/napc/physics/FEC/FEC2012/papers/132_THP311.pdf
Ming-Chieh Lin, Peter H. Stoltz, David N. Smithe, Hoyoung Song, Hyoung Jong Kim, Jin Joo Choi, Seon Joo Kim, and Sung Hoon Jang, “Design and modeling of multistage depressed collectors by using 3D conformal finite-difference time-domain particle-in-cell simulations”, Journal of the Korean Physical Society 60, 731–738 (2012). https://doi.org/10.3938/jkps.60.731
Paul Mullowney, Ming-Chieh Lin, Kevin Paul, Cory Ahrens, Michael Loh, R. J.Cooper, D. C. Radford, and Ethan Hull, “Computational models of germanium point contact detectors”, Nuclear Instruments and Methods in Physics Research A 662, 33–44 (2012). https://doi.org/10.1016/j.nima.2011.09.061
R. J. Cooper, D. C. Radford, E. Hull, K. Lagergren, P. Mullowney, M.-C. Lin, K. Paul, C. Athens, and M. Loh, “Effect of a surface channel on the performance of a P-type Point Contact HPGe detector”, Nuclear Instruments and Methods in Physics Research Section A 680, 48-55 (2012). http://dx.doi.org/10.1016/j.nima.2012.04.005
B. M. COWAN, S. Y. KALMYKOV, A. BECK, X. DAVOINE, K. BUNKERS, A. F. LIFSCHITZ, E. LEFEBVRE, D. L. BRUHWILER, B. A. SHADWICK, and D. P. UMSTADTER, “Computationally efficient methods for modelling laser wakefield acceleration in the blowout regime”, Journal of Plasma Physics 78, 469-482 (2012). https://doi.org/10.1017/S0022377812000517
Elizabeth C. Merritt, Alan G. Lynn, Mark A. Gilmore, Carsten Thoma, John Loverich, and Scott C. Hsu, “Multi-chord fiber-coupled interferometry of supersonic plasma jets”, Review of Scientific Instruments 83, 10D523 (2012). (invited) https://doi.org/10.1063/1.4734496
G. Singh, M. M. Kulkarni, D. Smilgies, S. Sides, B. Berry, D. Raghavan, D.G. Bucknall, B. Sumpter, and A. Karim, “Directed Assembly of Model Block Copolymer-PCBM Blend System for Photovoltaic Applications”, MRS Online Proceedings Library 1390, 00443 (2012). https://doi.org/10.1557/opl.2012.443
Rajeev Kumar, Yige Li, Scott W Sides, Jimmy W Mays, and Bobby G Sumpter, “Morphology diagrams for A2B copolymer melts: real-space self-consistent field theory”, J. Phys.: Conf. Ser. 402, 012042 (2012). https://doi.org/10.1088/1742-6596/402/1/012042
David G. Bucknall, Gabriel Bernardo, Meisha L. Shofner, Deb Nabankur, Dharmaraj Raghavan, Bobby G. Sumpter, Scott Sides, Abul Huq, and Alamgir Karim, “Phase Morphology and Molecular Structure Correlations in Model Fullerene-Polymer Nanocomposites”, Materials Science Forum 714, 63–66 (2012). https://doi.org/10.4028/www.scientific.net/MSF.714.63

2011 PUBLICATIONS

Travis M Austin, John R Cary, Serguei Ovtchinnikov, Gregory R Werner, and Leo Bellantoni, “Validation of frequency extraction calculations from time-domain simulations of accelerator cavities”, Comput. Sci. Discov. 4, 015004 (2011). https://doi.org/10.1088/1749-4699/4/1/015004
H. Childs, E. Brugger, B. Whitlock, J. Meredith, S. Ahern, K. Bonnell, M. Miller, G. H. Weber, C. Harrison, D. Pugmire, T. Fogal, C. Garth, A. Sanderson, E. W. Bethel, M. Durant, D. Camp, J. M. Favre, O. Ruebel, P. Navratil, M. Wheeler, P. Selby, and F. Vivodtzev, “VisIt: An End-User Tool For Visualizing and Analyzing Very Large Data”, In Proceedings of SciDAC (2011). http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.393.8134&rep=rep1&type=pdf
John Loverich, Ammar Hakim, Uri Shumlak, “A Discontinuous Galerkin Method for Ideal Two-Fluid Plasma Equations”, Communications in Computational Physics 9, 240-268 (2011). https://doi.org/10.4208/cicp.250509.210610a
Stephen D. Miller, Jean-Christophe Bilheux, Shaun S. Gleason, Trent L. Nichols, Philip R. Bingham and Mark L. Green, “Large-Scale User Facility Imaging and Scattering Techniques to Facilitate Basic Medical Research”, Medical Imaging, Chap 6, Okechukwu Felix Erondu (Ed.), IntechOpen, ISBN: 978-953-307-774-1, (2011). https://doi.org/10.5772/28419
Alexander Pletzer and H. R. Strauss, “An efficient method for solving elliptic boundary element problems with application to the tokamak vacuum problem”, Computer Physics Communications 182, 2077-2083 (2011). https://doi.org/10.1016/j.cpc.2011.05.001
Benjamin M. Cowan, David L. Bruhwiler, Estelle Cormier-Michel, Eric Esarey, Cameron GR Geddes, Peter Messmer, and Kevin M. Paul, “Characteristics of an envelope model for laser–plasma accelerator simulation”, Journal of Computational Physics 230, 61-86 (2011). https://doi.org/10.1016/j.jcp.2010.09.009
S. E. Kruger, T. G. Jenkins, E. D. Held, J. J. Ramos, R. W. Harvey, and D. D. Schnack, “Coupled Simulations of RF Feedback Stabilization of Tearing Modes”, in Proceedings of the 5th IAEA Technical Meeting on the Theory of Plasma Instabilities, IAEA, Vienna, Austria, B1.3 (2011). http://w3fusion.ph.utexas.edu/ifs/iaeapi/papers/b1-3-kruger-scott-pi-paper.pdf
Carl A.Bauer, Gregory R.Werner, and John R.Cary, “A second-order 3D electromagnetics algorithm for curved interfaces between anisotropic dielectrics on a Yee mesh”, Journal of Computational Physics 230, 2060-2075 (2011). https://doi.org/10.1016/j.jcp.2010.12.005

2010 PUBLICATIONS

B. J. Burke, S. E. Kruger, C. C. Hegna, P. Zhu, P. B. Snyder, C. R. Sovinec, and E. C. Howell, “Edge localized linear ideal magnetohydrodynamic instability studies in an extended-magnetohydrodynamic code”, Physics of Plasmas 17, 032103 (2010). https://doi.org/10.1063/1.3309732
John R. Cary, Ammar Hakim, Mahmood Miah, Scott Kruger, Alexander Pletzer, Svetlana Shasharina, Srinath Vadlamani, Ronald Cohen, Tom Epperly, Tom Rognlien, Alexei Pankin, Richard Groebner, Satish Balay, Lois McInnes, Hong Zhang, “FACETS – a Framework for Parallel Coupling of Fusion Components”, Proceedings of the 2010 18th Euromicro Conference on Parallel, Distributed and Network-based Processing, 435–442 (2010). https://doi.org/10.1109/PDP.2010.83
Yongjun Choi, John Loverich, Sudhakar Mahalingam, and Peter Messmer, “Towards Hall Thruster Erosion Prediction Using a Kinetic Plasma Model and a Molecular Dynamics Simulation,” Proceedings of the 48th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition, 624 (2010). https://doi.org/10.2514/6.2010-624
Yongjun Choi, Sudhakar Mahlingam, John Loverich, and Peter Messmer, “Predicting Hall Thruster Operational Lifetime Using a Kinetic Plasma Model and a Molecular Dynamics Simulation,” Proceedings of the 46th AIAA/ASME/SAE/ASEE Joint Propulsion Conference & Exhibit, 6941 (2010). https://doi.org/10.2514/6.2010-6941
Z. Insepov, J. Norem, Th. Proslier, S. Mahalingam, and S. Veitzer, “Numerical Modeling of Arcs in Accelerators”, Proceedings of LINAC2010, MOP066 (2010). https://accelconf.web.cern.ch/LINAC2010/papers/mop066.pdf
Z. Insepov, J. Norem, and S. Veitzer, “Atomistic self-sputtering mechanisms of rf breakdown in high-gradient linacs”, Nuclear Instruments and Methods in Physics Research Section B 268, 642-650 (2010). https://doi.org/10.1016/j.nimb.2009.12.016
Thomas G. Jenkins, Scott E. Kruger, C. C. Hegna, Dalton D. Schnack, and Carl R. Sovinec, “Calculating electron cyclotron current drive stabilization of resistive tearing modes in a nonlinear magnetohydrodynamic model”, Physics of Plasmas 17, 012502 (2010). https://doi.org/10.1063/1.3276740
Michael Jonell, James Menart, and Sudhakar Mahalingam, “Particle-in-Cell Model of the NEXT Ion Engine at Numerous Throttling Conditions”, Proceedings of the 46th AIAA/ASME/SAE/ASEE Joint Propulsion Conference & Exhibit, 6863 (2010). https://doi.org/10.2514/6.2010-6863
Alexandre Likhanskii, “Particle-in-Cell Modeling of the Pulsed DBD Plasma Actuator”, Proceedings of the 40th Fluid Dynamics Conference and Exhibit, 5101 (2010). https://doi.org/10.2514/6.2010-5101
Alexandre Likhanskii, Mikhail Shneider, Dmitry Opaits, Sergey Macheret, and Richard Miles, “Limitations of the DBD effects on the external flow”, Proceedings of the 48th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition, 470 (2010). https://doi.org/10.2514/6.2010-470
M. C. Lin, C. Nieter, P. H. Stoltz, and D. N. Smithe, “Accurately and Efficiently Studying the RF Structures Using a Conformal Finite-Difference Time-Domain Particle-in-Cell Method”, The Open Plasma Physics Journal 3, 48-52 (2010). https://doi.org/10.2174/1876534301003010048
J. Loverich and A. Hakim, “Two-Dimensional Modeling of Ideal Merging Plasma Jets”, Journal of Fusion Energy 29, 532–539 (2010). https://doi.org/10.1007/s10894-010-9321-z
Sudhakar Mahalingam, Yongjun Choi, J. O. H. N. Loverich, Peter H. Stoltz, Mike Jonell, and J. Menart, “Dynamic Electric Field Calculations Using a Fully Kinetic Ion Thruster Discharge Chamber Model”, Proceedings of the 46th AIAA/ASME/SAE/ASEE Joint Propulsion Conference & Exhibit, 6944 (2010). https://doi.org/10.2514/6.2010-6944
Sudhakar Mahalingam and James A. Menart, “Particle-Based Plasma Simulations for an Ion Engine Discharge Chamber”, Journal of Propulsion and Power 26, 673-688 (2010). https://doi.org/10.2514/1.45954
S. Mahalingam, S. A. Veitzer, and P. H. Stoltz, “High-gradient RF box cavity breakdown simulations using 3-D particle tracking code VORPAL”, Proceedings of the 2010 IEEE International Power Modulator and High Voltage Conference, 731-734 (2010). https://doi.org/10.1109/IPMHVC.2010.5958463
J. Norem, Z. Insepov, D. Huang, S. Mahalingam, and S. Veitzer, “The problem of RF Gradient Limits,” AIP Conference Proceedings 1222, 348 (2010). https://doi.org/10.1063/1.3399340
C. Prokop, P. Piot, M. C. Lin, and P. Stoltz, “Numerical modeling of a table-top tunable Smith–Purcell terahertz free-electron laser operating in the super-radiant regime”, Applied Physics Letters 96, 151502 (2010). https://doi.org/10.1063/1.3386543
Oliver Rübel, Sean Ahern, E. Wes Bethel, Mark D. Biggin, Hank Childs, Estelle Cormier-Michel, Angela DePace, Michael B. Eisen, Charless C. Fowlkes, Cameron G.R. Geddes, Hans Hagen, Bernd Hamann, Min-Yu Huang, Soile V.E. Keränen, David W. Knowles, Cris L. Luengo Hendriks, Jitendra Malik, Jeremy Meredith, Peter Messmer, Prabhat, Daniela Ushizima, Gunther H. Weber, and Kesheng Wu, “Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data”, Procedia Computer Science 1, 1757-1764 (2010). https://doi.org/10.1016/j.procs.2010.04.197
A V Sobol, D L Bruhwiler, G I Bell, A Fedotov, and V Litvinenko, “Numerical calculation of dynamical friction in electron cooling systems, including magnetic field perturbations and finite time effects”, New J. Phys. 12, 093038 (2010). https://doi.org/10.1088/1367-2630/12/9/093038
Seth A. Veitzer, Sudhakar Mahalingam, Peter H. Stoltz, and J. Norem, “Modeling Breakdown and Electron Orbits in High‐Gradient Accelerating Cavities”, AIP Conference Proceedings 1299, 376 (2010). https://doi.org/10.1063/1.3520346
Gabriele Garzoglio, Nanbor Wang, Igor Sfiligoi, Tanya Levshina, and Balamurali Ananthan, “SVOPME: A Scalable Virtual Organization Privileges Management Environment”, J. Phys.: Conf. Ser. 219, 062013 (2010). https://doi.org/10.1088/1742-6596/219/6/062013
T.M. Austin, J.R. Cary, D.N. Smithe, and C. Nieter, “Alternating Direction Implicit Methods for FDTD using the Dey-Mittra Embedded Boundary Method”, The Open Plasma Physics Journal 3, 29-35 (2010). https://doi.org/10.2174/1876534301003010029
C. R. Douglas, M. C. Lin, P. H. Stoltz, D. N. Smithe, J. S. Lee, and H. Song, “A 3D Analysis of a Microfabricated Ladder Type Slow-Wave Structure for a Millimeter-Wave Traveling-Wave Tube”, IEEE Trans. Electron Devices 57, 3500-3507 (2010). https://doi.org/10.1109/TED.2010.2076381
B. M. Cowan, M.-C. Lin, B. T. Schwartz, E. R. Colby, R. J. England, R. J. Noble, J. E. Spencer, R. L. Byer, and C. M. McGuinness, “Compact couplers for photonic crystal laser-driven accelerator structures”, Proceedings of IPAC2010, THPEC013 (2010). https://accelconf.web.cern.ch/IPAC10/papers/thpec013.pdf
David N. Smithe, “Full-Field/Scattered-Field Formulation Containing a Dielectric Interface”, The Open Plasma Physics Journal 3, 60-72 (2010). https://doi.org/10.2174/1876534301003010060

2009 PUBLICATIONS

T.M. Austin, J.R. Cary, G. Werner, and L. Bellantoni, “Validation of Broadly Filtered Diagonalization Method for Extracting Frequencies and Modes from High Performance Computations”, J. Phys.: Conf. Ser. 180, 012003 (2009). https://doi.org/10.1088/1742-6596/180/1/012003
K. Tian, G. Cheng, F. Marhauser, H. Wang, and C.D. Zhou, “Benchmark of different electromagnetic codes for the high frequency calculation”, Proceedings of PAC09 , TH5PFP093 (2009). https://accelconf.web.cern.ch/pac2009/papers/th5pfp093.pdf
R. Busby, D. A. Dimitrov, J. R. Cary, I. Ben-Zvi, X. Chang, J. Keister, E. Miller, T. Rao, J. Smedley, and Q. Wu, “3D Simulations of Secondary Electron Generation and Transport in Diamond Electron Beam Amplifiers”, Proceedings of PAC09, FR5PFP081 (2009). https://accelconf.web.cern.ch/PAC2009/papers/fr5pfp081.pdf
John R. Cary and Alain J. Brizard, “Hamiltonian Theory of Guiding-Center Motion”, Rev. Mod. Phys. 81, 693 (2009). https://doi.org/10.1103/RevModPhys.81.693
J R Cary, J Candy, J Cobb, R H Cohen, T Epperly, D J Estep, S Krasheninnikov, A D Malony, D C McCune, L McInnes, A Pankin, S Balay, J A Carlsson, M R Fahey, R J Groebner, A H Hakim, S E Kruger, M Miah, A Pletzer, S Shasharina, S Vadlamani, D Wade-Stein, T D Rognlien, A Morris, S Shende, G W Hammett, K Indireshkumar, A Yu Pigarov, and H Zhang, “Concurrent, parallel, multiphysics coupling in the FACETS project,” SciDAC 2009, J. Phys.: Conf. Ser. 180, 012056 (2009). https://doi.org/10.1088/1742-6596/180/1/012056
Yongjun Choi, Iain D. Boyd, and Michael Keidar, “Effect of a Magnetic Field in Simulating the Plume-Field of an Anode Layer Hall Thruster”, Journal of Applied Physics 105, 013303 (2009). https://doi.org/10.1063/1.3055399
E. Cormier-Michel, C.G.R. Geddes, E. Esarey, C.B. Schroeder, Cs. Toth, D.L. Bruhwiler, K. Paul, B. Cowan, and W.P. Leemans, “Scaled simulations of a 10 GeV accelerator,” AIP Conference Proceedings 1086, 297 (2009). https://doi.org/10.1063/1.3080921
B. Cowan, D. Bruhwiler, E. Cormier‐Michel, E. Esarey, C. G. R. Geddes, P. Messmer, and K. Paul, “Laser wakefield simulation using a speed-of-light frame envelope model,” AIP Conference Proceedings 1086, 309 (2009). https://doi.org/10.1063/1.3080924
S. Di Mitri, E. Allaria, L. Badano, C. Bontoiu, M. Cornacchia, P. Craievich, M. Danailov, G. De Ninno, B. Diviacco, O. Ferrando, S. Ferry, F. Iazzourene, S.V. Milton, G. Penco, S. Spampinati, M. Trovo’, M. Veronese, W. Fawley, S. Lidia, G. Penn, J. Qiang, K.G. Sonnad, M. Venturini, R. Warnock, A.A. Zholents, I.V. Pogorelov, M. Borland, G. Bassi, J.A. Ellison, K. Heinemann, R. Fiorito, A. Shkvarunets, and J.C. Tobin, “Design and simulation challenges for FERMI@elettra”, Nuclear Instruments and Methods in Physics Research Section A 608, 19-27 (2009). https://doi.org/10.1016/j.nima.2009.06.028
D. A. Dimitrov, R. Busby, J. R. Cary, I. Ben-Zvi, X. Chang, J. Keister, E. Muller, T. Rao, J. Smedley, and Q. Wu, “Investigation of Charge Gain in Diamond Electron Beam Amplifiers via 3D Simulations”, In Proceedings of PAC09, FR5PFP082 (2009). https://accelconf.web.cern.ch/pac2009/papers/fr5pfp082.pdf
D. A. Dimitrov, R. Pundaleeka, A. Qasem, and J. Heﬁn, “ISENS: A system for information integration, exploration, and querying of multi-ontology data sources”, 2009 IEEE International Conference on Semantic Computing, 330-335 (2009). https://doi.org/10.1109/ICSC.2009.50
C.G.R. Geddes, E. Cormier-Michel, E. Esarey, C.B. Schroeder, W.P. Leemans, D.L. Bruhwiler, B. Cowan, C. Nieter, K. Paul, and J.R. Cary, “Scaled Simulation Design of High Quality Laser Wakefiled Accelerator Stages”, Proceedings of PAC09, WE6RFP075 (2009). https://escholarship.org/uc/item/4mj0c8w0
C.G.R. Geddes, E. Cormier-Michel, E. Esarey, K. Nakamura, G.R. Plateau, C.B. Schroeder, Cs. Toth, D.L. Bruhwiler, J.R. Cary, and W.P. Leemans, “Plasma gradient controlled injection and postacceleration of high quality electron bunches,” AIP Conference Proceedings 1086, 12 (2009). https://doi.org/10.1063/1.3080892
C. G. R. Geddes, E Cormier-Michel, E. H. Esarey, C. B. Schroeder, J.-L. Vay, W. P. Leemans, D. L.. Bruhwiler, J. R. Cary, B. Cowan, M. Durant, P. Hamill, P. Messmer, P. Mullowney, C. Nieter, K. Paul, S. Shasharina, S. Veitzer, G. Weber, O. Rübel, D. Ushizima, Prabhat, W.Bethel, and J. Wu. “Large Fields for Smaller Facility Sources”, SciDAC Review, 13-21 (2009). https://crd.lbl.gov/assets/pubs_presos/geddes.pdf
Paul Hamill, David Alexander, Svetlana Shasharina, “Web Service Validation Enabling Test-Driven Development of Service-Oriented Applications,” 2009 Congress on Services – I, 467-470 (2009). https://doi.org/10.1109/SERVICES-I.2009.113
Z. Insepov, J. Norem, D. Huang, S. Mahalingam, P. Stoltz, and S. Veitzer, “Modeling RF Breakdown Arcs”, Proceedings of PAC09, 800-802 (2009). https://accelconf.web.cern.ch/pac2009/papers/tu5pfp001.pdf
Michael Jonell, James Menart, and Sudhakar Mahalingam, “Particle Based Plasma Simulation of NEXT Ion Engine”, In Proceedings of the 45th AIAA/ASME/SAE/ASEE Joint Propulsion Conference & Exhibit (2009). https://doi.org/10.2514/6.2009-4818
W.P. Leemans, E. Esarey, C.G.R. Geddes, Cs. Toth, C.B. Schroeder, K. Nakamura, A.J. Gonsalves, D. Panasenko, E. Cormier-Michel, G.R. Plateau, C. Lin, D.L. Bruhwiler, and J.R. Cary, “Progress on laser plasma accelerator development using transversely and longitudinally shaped plasmas”, Comptes Rendus Physique 10, 130-139 (2009). https://doi.org/10.1016/j.crhy.2009.05.001
Sudhakar Mahalingam, Chet Nieter, John Loverich, David Smithe, and Peter Stoltz, “Space Charge Limited Currents Calculations in Coaxial Cylindrical Diodes Using Particle-in-Cell Simulations”, The Open Plasma Physics Journal 2, 63-69, (2009). https://doi.org/10.2174/1876534300902010063
Stephen D Miller, Kenneth W Herwig, Shelly Ren, Sudharshan S Vazhkudai, Pete R Jemian, Steffen Luitz, Andrei A Salnikov, Igor Gaponenko, Thomas Proffen, Paul Lewis, and Mark L Green, “Data management and its role in delivering science at DOE BES user facilities – Past, Present, and Future”, J. Physics: Conf. Series 180, 012049 (2009). https://doi.org/10.1088/1742-6596/180/1/012049
C.Nieter, John R.Cary, Gregory R. Werner, David N. Smithe, and Peter H. Stoltz, “Application of Dey-Mittra conformal boundary algorithm to 3D electromagnetic modeling”, J. Comp. Phys. 228, 7902-7916 (2009). https://doi.org/10.1016/j.jcp.2009.07.025
K. H. Pae, I. W. Choi, S. J. Hahn, J. R. Cary, and J. Lee, “Proposed hole-target for improving maximum proton energy driven by a short intense laser pulse”, Phys. Plasma 16, 073106 (2009). https://doi.org/10.1063/1.3174434
K. Paul, D. A. Dimitrov, R. Busby, D. L. Bruhwiler, D. Smithe, J. R. Cary, J. Kewisch, D. Kayran, R. Calaga, and I. Ben-Zvi, “Half‐Cell RF Gun Simulations with the Electromagnetic Particle‐in‐Cell Code VORPAL”, AIP Conference Proceedings 1086, 334-339 (2009). https://doi.org/10.1063/1.3080928
Svetlana Shasharina, John R. Cary, Seth Veitzer, Paul Hamill, Scott Kruger, Marc Durant, and David A. Alexander, “VizSchema – Visualization Interface for Scientific Data”, Proceedings of the IADIS International Conference on Computer Graphics, Visualization, Computer Vision and Image Processing (2009). http://www.iadisportal.org/digital-library/vizschema-%C2%96-visualization-interface-for-scientific-data
David N.Smithe, John R.Cary, and Johan A. Carlsson, “Divergence preservation in the ADI algorithms for electromagnetics”, Journal of Computational Physics 228, 7289-7299 (2009). https://doi.org/10.1016/j.jcp.2009.06.025
Abir Qasem, Dimitre A. Dimitrov, and Jeff Heflin, “Towards Scalable Information Integration with Instance Coreferences”, in Proceedings of International Joint Conferences on Artificial Intelligence (IJCAI09), Pasadena, CA (2009). http://swat.cse.lehigh.edu/pubs/qasem09a.pdf
J. Qiang, R. D. Ryne, M. Venturini, A. A. Zholents, and I. V. Pogorelov, “High resolution simulation of beam dynamics in electron linacs for x-ray free electron lasers”, Phys. Rev. ST Accel. Beams 12, 100702 (2009). https://doi.org/10.1103/PhysRevSTAB.12.100702
S. A. Veitzer, P. LeBrun, J. R. Cary, P. Spentzouris, P. H. Stoltz, and J. F. Amundson, “Computation of Electron Cloud Diagnostics and Mitigation in the Main Injector”, J. Phys.: Conf. Ser. 180, 012007 (2009). https://doi.org/10.1088/1742-6596/180/1/012007
G. R Werner, C. A. Bauer, and J. R. Cary, “Wakefields in Photonic Crystal Cavities”, Phys. Rev. ST Accel. Beams 12, 071301 (2009). https://doi.org/10.1103/PhysRevSTAB.12.071301
K. Paul, C. Huang, D. L. Bruhwiler, W. B. Mori, F. S. Tsung, E. Cormier-Michel, C. G. R. Geddes, B. Cowan, J. R. Cary, E. Esarey, R. A. Fonseca, S. F. Martins, and L. O. Silva, “Benchmarking the Codes VORPAL, OSIRIS, and QuickPIC with Laser Wakefield Acceleration Simulations”, AIP Conference Proceedings 1086, 315 (2009). https://doi.org/10.1063/1.3080925
C. G. R. Geddes, E. Cormier-Michel, E. Esarey, K. Nakamura, G. R. Plateau, C. B. Schroeder, Cs. Toth, D. L. Bruhwiler, J. R. Cary, and W. P. Leemans, “Plasma Gradient Controlled Injection and Postacceleration of High-Quality Electron Bunches”, AIP Conference Proceedings 1086, 12 (2009). https://doi.org/10.1063/1.3080892
David L. Bruhwiler, John R. Cary, Benjamin M. Cowan, Kevin Paul, Cameron G. R. Geddes, Paul J. Mullowney, Peter Messmer, Eric Esarey, Estelle Cormier-Michel, Wim Leemans, and Jean-Luc Vay, “New Developments in the Simulation of Advanced Accelerator Concepts”, AIP Conference Proceedings 1086, 29 (2009). https://doi.org/10.1063/1.3080922
D. A. Babayev, G. I. Bell, U. G. Nuriyev, “The bandpass problem: combinatorial optimization and library of problems”, Journal of Combinatorial Optimization 18, 151–172 (2009). https://doi.org/10.1007/s10878-008-9143-3
Dimitre A. Dimitrov, Richard Busby, John R. Cary, Ilan Ben-Zvi, John Smedley, Xiangyun Chang, Triveni Rao, Jeffrey W. Keister, Erik M. Muller, and Andrew Burrill, “Simulations of Charge Gain and Collection Efficiency from Diamond Amplifiers”, MRS Online Proceedings Library 1203, 1743 (2009). https://doi.org/10.1557/PROC-1203-J17-43

2008 PUBLICATIONS

C Ng, V Akcelik, A Candel, S Chen, L Ge, A Kabel, Lie-Quan Lee, Z Li, E Prudencio, G Schussman, R Uplenchwar, L Xiao, K Ko, T Austin, J R Cary, S Ovtchinnikov, D N Smith, G R Werner, and L Bellantoni, “Design and optimization of large accelerator systems through high-fidelity electromagnetic simulations”, J. Physics: Conf. Series 125, 012003 (2008). https://doi.org/10.1088/1742-6596/125/1/012003
D. A. Alexander, C. Li, J. Lauret, and V. Fine, “User centric monitoring (UCM) information service for the next generation of Grid-enabled scientists”, Journal of Physics: Conference Series 119, 052001 (2008). https://doi.org/10.1088/1742-6596/119/5/052001
C. A. Bauer, G. R. Werner, and J. R. Cary, “Truncated photonic crystal cavities with optimized mode confinement”, J. Appl. Phys. 104, 053107 (2008). https://doi.org/10.1063/1.2973669
George I. Bell, David L. Bruhwiler, Alexei Fedotov, Andrey Sobol, Richard S. Busby, Peter Stoltz, Dan T. Abell, Peter Messmer, Ilan Ben-Zvi, and Vladimir Litvinenko, “Simulating the dynamical friction force on ions due to a briefly co-propagating electron beam”, Journal of Computational Physics 227, 8714-8735 (2008). https://doi.org/10.1016/j.jcp.2008.06.019
J R Cary, J Candy, R H Cohen, S Krasheninnikov, D C McCune, D J Estep, J Larson, A D Malony, A. Pankin, P H Worley, J A Carlsson, A H Hakim, P Hamill, S Kruger, M Miah, S Muzsala, A Pletzer, S Shasharina, D Wade-Stein, N Wang, S. Balay, L McInnes, H Zhang, T Casper, L Diachin, T Epperly, T D Rognlien, M R Fahey, J Cobb, A Morris, S Shende, G W Hammett, K Indireshkumar, D Stotler, and A Yu Pigarov, “First results from core-edge parallel composition in the FACETS project”, J. Physics: Conf. Series 125, 012040 (2008). https://doi.org/10.1088/1742-6596/125/1/012040
Benjamin M. Cowan, “Three-dimensional dielectric photonic crystal structures for laser-driven acceleration”, Phys. Rev. ST Accel. Beams 11, 011301 (2008). https://doi.org/10.1103/PhysRevSTAB.11.011301
S. O. Cetiner, P. Stoltz, P. Messmer, and J.-L. Cambier, “Dependence of electron peak current on hollow cathode dimensions and seed electron energy in a pseudospark discharge”, J. Appl. Phys. 103, 023304 (2008). https://doi.org/10.1063/1.2832507
C G R Geddes, D L Bruhwiler, J R Cary, W B Mori, J-L Vay, S F Martins, T Katsouleas, E Cormier-Michel, W M Fawley, C Huang, X Wang, B Cowan, V K Decyk, E Esarey, R A Fonseca, W Lu, P Messmer, P Mullowney, K Nakamura, K Paul, G R Plateau, C B Schroeder, L O Silva, C Toth, F S Tsung, M Tzoufras, T Antonsen, J Vieira, and W P Leemans, “Computational studies and optimization of wakefield accelerators”, J. Physics: Conf. Series 125, 012002 (2008). https://doi.org/10.1088/1742-6596/125/1/012002
Mark L. Green, David A.Alexander, Roopa Pundaleeka, and James Matykiewicz, “Automatic Certificate Based Account Generation and Secure AJAX Calls in a Grid Portal”, 2008 Grid Computing Environments Workshop, 1 – 8 (2008). https://doi.org/10.1109/GCE.2008.4738444
Ammar H. Hakim, “Extended MHD modelling with the ten-moment equations”, Journal of Fusion Energy 27, 36-43 (2008). https://doi.org/10.1007/s10894-007-9116-z
Liangliang Ji, Baifei Shen, Xiaomei Zhang, Fengchao Wang, Zhangyin Jin, Xuemei Li, Meng Wen, and John R. Cary, “Generating Monoenergetic Heavy-Ion Bunches with Laser-Induced Electrostatic Shocks”, Phys. Rev. Lett. 101, 164802 (2008). https://doi.org/10.1103/PhysRevLett.101.164802
S. Mahalingam, J. R. Cary, P. H. Stoltz, and S. A. Veitzer, “Modeling breakdown in RF cavities using Particle-in-Cell (PIC) Codes”, In Proceedings of EPAC08, Genoa, Italy (2008). https://accelconf.web.cern.ch/e08/papers/wepp111.pdf
Sudhakar Mahalingam and James Menart, “Physical parametric studies in an ion engine discharge chamber using PIC-MCC simulations”, 44th AIAA/ASME/SAE/ASEE Joint Propulsion Conference & Exhibit, Hartford, CT (2008). https://doi.org/10.2514/6.2008-4733
S. Mahalingam, S. A. Veitzer, and P. H. Stoltz, “Modeling breakdown processes in RF cavities using Particle-in-Cell (PIC) Codes”, In Proceedings of 28th IEEE International Power Modulator and High Voltage Conference, Las Vegas, NV (2008). https://doi.org/10.1109/IPMC.2008.4743640
S. Muszala, T. Epperly, and N. Wang, “Babel Fortran 2003 Binding for structured data types”, In Proceedings of PARA 2008-9th International Workshop on State-of-the-Art in Scientific and Parallel Computing, Trondheim, Norway, LLNL-CONF-403478 (2008). https://www.osti.gov/servlets/purl/938498
Károly Németh, Baifei Shen, Yuelin Li, Robert Crowell, Katherine C. Harkay, and John R. Cary, “Laser driven coherent betatron oscillation in a laser-wakefield cavity”, Phys. Rev. Lett. 100, 095002 (2008). https://doi.org/10.1103/PhysRevLett.100.095002
Penescu L., R. Catheralla, J. Lettrya, and T. Storaa, “Numerical simulations of space charge effects and plasma dynamics for FEBIAD ion sources”, Nuclear Instruments and Methods in Physics Research Section B 266, 4415-4419 (2008). https://doi.org/10.1016/j.nimb.2008.05.071
A. Pletzer, D. McCune, S. Muszala, S. Vadlamani, and S. Kruger, “Exposing Fortran Derived Types to C and Other Languages, Computing in Science and Engineering”, Computing in Science & Engineering 10, 86-92 (2008). http://doi.org/10.1109/MCSE.2008.94
A. Qasem, D. A. Dimitrov, and J. Heflin. “Efficient Selection and Integration of Data Sources for Answering Semantic Web Queries”, In Proceedings of the Second IEEE International Conference on Semantic Computing, 245-252 (2008). https://doi.org/10.1109/ICSC.2008.31
A. Qasem, D. A. Dimitrov, and J. Heflin, “Goal Node Search for Semantic Web Source Selection”, In Proceedings of the 2008 IEEE/WIC/ACM International Conference on Web Intelligence and Intelligent Agent Technology, 566-569 (2008). https://doi.org/10.1109/WIIAT.2008.210
A. Qasem, D. A. Dimitrov, and J. Heﬂin, “ISENS: A Multi-ontology Query System for the Semantic Deep Web”, In Proceedings of the 10th IEEE Conference on E-Commerce Technology and the Fifth IEEE Conference on Enterprise Computing, E-Commerce and E-Services, 396–399 (2008). https://doi.org/10.1109/CECandEEE.2008.104
V. H. Ranjbar and P. Ivanov, “Chromaticity and wakefield effect on the transverse motion of longitudinal bunch slices in the Fermilab Tevatron”, Phys. Rev. ST Accel. Beams 11, 084401 (2008). https://doi.org/10.1103/PhysRevSTAB.11.084401
C M Roach, M Walters, R V Budny, F Imbeaux, T W Fredian, M Greenwald, J A Stillerman, D A Alexander, J Carlsson, J R Cary, F Ryter, J Stober, P Gohil, C Greenfield, M Murakami, G Bracco, B Esposito, M Romanelli, V Parail, P Stubberfield, I Voitsekhovitch, C Brickley, A R Field, Y Sakamoto, T Fujita, T Fukuda, N Hayashi, G M D Hogeweij, A Chudnovskiy, N A Kinerva, C E Kessel, T Aniel, G T Hoang, J Ongena, E J Doyle, W A Houlberg, and A R Polevoi, “The 2008 Public Release of the International Multi-tokamak Confinement Profile Database”, Nuclear Fusion 48, 125001 (2008). https://doi.org/10.1088/0029-5515/48/12/125001
P. Spentzouris, J. Cary, L. C. McInnes, W. Mori, C. Ng, E. Ng and R. Ryne, “Community petascale project for accelerator science and simulation: advancing computational science for future accelerators and accelerator technologies”, Journal of Physics: Conference Series 125, 012005 (2008). https://doi.org/10.1088/1742-6596/125/1/012005
Peter H. Stoltz, Brian Granger, Ammar Hakim, Scott W. Sides, and Seth A. Veitzer, “Effects of Sputtering of and Radiation by Aluminium on Magnetized Target Fusion Plasmas”, Journal of Fusion Energy 27, 119-122 (2008). https://doi.org/10.1007/s10894-007-9102-5
Bernard Talin, Annette Calisti, James W. Dufty, and Ilya V. Pogorelov, “Electron dynamics at a positive ion”, Phys. Rev. E 77, 036410 (2008). https://doi.org/10.1103/PhysRevE.77.036410
C. Y. Tan and V. H. Ranjbar, “Analytic approximation of the head-tail phase difference from continuous transverse excitation for measuring chromaticity”. Phys. Rev. ST Accel. Beams 11, 032802 (2008). https://doi.org/10.1103/PhysRevSTAB.11.032802
Nong Xiang and John R. Cary, “Second-Harmonic Generation of Electron-Bernstein Waves in an Inhomogeneous Plasma”, Phys. Rev. Lett. 100, 085002 (2008). https://doi.org/10.1103/PhysRevLett.100.085002
Gregory R. Werner and John R. Cary, “Extracting degenerate modes and frequencies from time-domain simulations with filter-diagonalization”, Journal of Computational Physics 227, 5200-5214 (2008). https://doi.org/10.1016/j.jcp.2008.01.040

2007 PUBLICATIONS

David N. Smithe, “Finite-difference time-domain simulation of fusion plasmas at radiofrequency time scales”, Physics of Plasmas 14, 056104 (2007). http://dx.doi.org/10.1063/1.2710784
C.G.R. Geddes, D. Bruhwiler, J.R. Cary, E. Cormier-Michel, E. Esarey, C.B. Schroeder, W.A. Isaacs, N. Stinus, P. Messmer, A. Hakim, K. Nakamura, A.J. Gonsalves, D. Panasenko, G.R. Plateau, Cs. Toth, B.Nagler, J. van Tilborg, T. Cowan, S. M. Hooker, and W.P. Leemans, “Laser wakefield simulations towards development of compact particle accelerators,” J. Physics: Conf. Series, 78, 012021 (2007). https://doi.org/10.1088/1742-6596/78/1/012021
D. Alexander, R. Pundaleeka, S. Tramer, J. Lauret, and V. Fine. “Portlets for User Centric Job and Task Monitoring for Open Science Grid Virtual Organizations”, Proceedings of International Workshop on Grid Computing Environments (GCE 2007). https://digitalarchive.rit.edu/xmlui/bitstream/handle/1850/7735/DAlexanderConfProc11-11-2007.pdf?sequence=1&isAllowed=y
John R. Cary and Nong Xiang, “Wave excitation in inhomogeneous dielectric media,” Phys. Rev. E 76, 055401(R) (2007). https://doi.org/10.1103/PhysRevE.76.055401
D. A. Dimitrov, R. E. Giacone, D. L. Bruhwiler, R. Busby, J. R. Cary, C. G. R. Geddes, E. Esarey, and W. P. Leemans, “Coupling of laser energy into plasma channels”, Phys. Plasmas 14, 043105 (2007). https://doi.org/10.1063/1.2721068
I. Doxas, C. Nieter, D. C. Radford, K. Lagergren, and John R. Cary, “An Approximate Method for Linear Signal Decomposition in Gamma-ray Tracking Detectors,” Nuclear Instruments and Methods in Physics Research Section A 580, 1331-1337 (2007). https://doi.org/10.1016/j.nima.2007.06.079
Fernando Perez and Brian E. Granger, “IPython: a system for interactive scientific computing”, Computing in Science & Engineering 9, 21-29 (2007). https://doi.org/10.1109/MCSE.2007.53
A. Qasem, D. A. Dimitrov, and J. Heﬂin, “Efficient Selection and Integration of Data Sources for Answering Semantic Web Queries”, Proceedings of the 6th International Semantic Web Conference (ISWC2007), New forms of reasoning for the Semantic Web (2007). http://ceur-ws.org/Vol-291/paper06.pdf
Svetlana G. Shasharina, Chuang Li, Nanbor Wang, Rooparani Pundaleeka, and David Wade-Stein, “Distributed Technologies for Remote Access of HDF Data”, In proceeding of 16th IEEE International Workshops on Enabling Technologies: Infrastructures for Collaborative Enterprises (WETICE-2007), Paris, France, 255-260, (2007). https://doi.org/10.1109/WETICE.2007.4407166
S. Shasharina, N. Wang, S. Muszala, R. Pundaleeka, “Grid and Component Technologies in Physics Applications,” Proceedings of ICALEPCS 2007, Knoxville, TN, 29-33 (2007). https://accelconf.web.cern.ch/ica07/PAPERS/MOPB01.PDF
Baifei Shen, Yuelin Li, Karoly Nemeth, Hairong Shang, Yong-chul Chae, Robert Soliday, Robert Crowell, Edward Frank, William Gropp, and John Cary, “Electron injection by a nanowire in the bubble regime”, Physics of plasmas 14, 053115 (2007). https://doi.org/10.1063/1.2728773
Baifei Shen, Yuelin Li, M. Y. Yu, and John Cary, “Bubble regime for ion acceleration in a laser-driven plasma”, Physical Review E 76, 055402 (2007). https://doi.org/10.1103/PhysRevE.76.055402
David N. Smithe, “Time domain modeling of plasmas at RF time-scales”, Journal of Physics: Conference Series 78, 012069 (2007). https://doi.org/10.1088/1742-6596/78/1/012069
Seth A. Veitzer, Peter H. Stoltz, John J. Barnard, “Evolution of the energy distribution of ions moving in aluminum targets”, Nuclear Instruments and Methods in Physics Research Section A 577, 207-210 (2007). https://doi.org/10.1016/j.nima.2007.02.089
Seth A. Veitzer and Peter H. Stoltz, “Simulations of electron generation and dynamics in a hollow cathode with applied magnetic field”, Nucl. Instrum. and Meth. in Physics Research Section B 261, 204-208 (2007). https://doi.org/10.1016/j.nimb.2007.04.291
Nanbor Wang, Rooparani Pundaleeka, and Johan Carlsson, “Distributed component support for integrating large-scale parallel HPC applications”, In Proceedings of the 2007 symposium on Component and framework technology in high-performance and scientific computing, 141-150 (2007). https://doi.org/10.1145/1297385.1297408
Gregory R. Werner, John R. Cary, “A Stable FDTD Algorithm for Non-diagonal, Anisotropic Dielectrics,” Journal of Computational Physics 226, 1085-1101 (2007). https://doi.org/10.1016/j.jcp.2007.05.008

2006 PUBLICATIONS

David A. Alexander, Balamurali Ananthan, Tony Johnson, and Victor Serbo, “Framework for interactive parallel dataset analysis on the grid”, Proceedings of the 2006 International Conference on Parallel Processing Workshops (ICPPW’06), 425 (2006). https://doi.org/10.1109/ICPPW.2006.37
D. A. Dimirov, J. Heflin, A. Qasem, and N. Wang, “Information Integration Via an End-to-End Distributed Semantic Web System”, Proceedings of the 5th International Semantic Web Conference (ISWC2006), Lecture Notes in Computer Science 4273, 764-777 (2006). https://doi.org/10.1007/11926078_55
A. Hakim, J. Loverich, and U. Shumlak, “A high resolution wave propagation scheme for ideal Two-Fluid plasma equations”, Journal of Computational Physics 219, 418-442 (2006). https://doi.org/10.1016/j.jcp.2006.03.036
Peter Messmer and Ralph Bodenner, “Accelerating scientific applications using FPGAs”, Xcell Journal 57, 70-73 (2006). https://www.xilinx.com/publications/archives/xcell/Xcell57.pdf
Peter Messmer, David Smithe, Paul Schoessow, and Ralph Bodenner, “FPGA-accelerated Finite-Difference Time-Domain Simulation on the Cray XD1 using Impulse C”, Proceedings of Cray User Group (CUG), (2006). https://cug.org/5-publications/proceedings_attendee_lists/2006CD/S06_Proceedings/pages/Authors/Messmer/Messmer_Paper.pdf
Nong Xiang, John R. Cary, Daniel C. Barnes, and John Carlsson, “Low-noise electromagnetic δf particle-in-cell simulation of electron Bernstein waves”, Phys. Plasmas 13, 062111 (2006). https://doi.org/10.1063/1.2215460
A. V. Fedotov, D. L. Bruhwiler, A. O. Sidorin, D. T. Abell, I. Ben-Zvi, R. Busby, J. R. Cary, and V. N. Litvinenko, “Numerical study of the magnetized friction force”, Phys. Rev. ST Accel. Beams 9, 074401 (2006). https://doi.org/10.1103/PhysRevSTAB.9.074401
Scott W. Sides, Bumjoon J. Kim, Edward J. Kramer, and Glenn H. Fredrickson. “Hybrid particle-field simulations of polymer nanocomposites”, Phys. Rev. Lett. 96, 250601 (2006). https://doi.org/10.1103/PhysRevLett.96.250601
P. H. Stoltz, J. P. Verboncoeur, R. H. Cohen, A. W. Molvik, J-L. Vay, and S. A. Veitzer, “Modeling ion-induced electrons in the High Current Experiment”, Physics of plasmas 13, 056702 (2006). https://doi.org/10.1063/1.2179027
Dan T. Abell, “Numerical Computation of High-Order Transfer Maps for RF Cavities”, Phys. Rev. ST Accel. Beams 9, 052001 (2006). https://doi.org/10.1103/PhysRevSTAB.9.052001
Peter Messmer and David L. Bruhwiler, “Simulating laser pulse propagation and low-frequency wave emission in capillary plasma channel systems with a ponderomotive guiding center model”, Phys. Rev. ST Accel. Beams 9, 031302 (2006). https://doi.org/10.1103/PhysRevSTAB.9.031302

2005 PUBLICATIONS

Svetlana G. Shasharina, Ovsei Volberg, Peter Stoltz, and Seth Veitzer, “GRIDL: High-Performance and Distributed Interactive Data Language”, Proceedings of the 14th IEEE International Symposium on High Performance Distributed Computing (HPDC-14), 291-292 (2005). https://doi.org/10.1109/HPDC.2005.1520980
G. Paesold, E. G. Blackman, and P. Messmer, “On particle acceleration and trapping by Poynting flux dominated flows”, Plasma Physics and Controlled Fusion 47, 1925-1947 (2005). https://doi.org/10.1088/0741-3335/47/11/005
Svetlana G. Shasharina and Chuang Li, “FSML: Fusion Simulation Markup Language for Interoperability of Data and Analysis tools”, Proceedings of Challenges of Large Applications in Distributed Environments, Research Triangle Park, North Carolina, 115-121 (2005). https://doi.org/10.1109/CLADE.2005.1520913
S.E. Kruger, D.D. Schnack, and C. R. Sovinec, “Dynamics of a Major Disruption of a DIII-D Plasma”, Physics of Plasmas 12, 056113 (2005). (Invited) https://doi.org/10.1063/1.1873872
D. Chandra, A. Sen, P. Kaw, M.P. Bora, and S.E. Kruger, “Effect of Sheared Flows on Classical and Neoclassical Tearing Modes”, Nuclear Fusion 45, 524 (2005). https://doi.org/10.1088/0029-5515/45/6/015
P.H. Stoltz, S.A. Veitzer, R.H. Cohen, A.W. Molvik, and J.-L. Vay, “Energy Loss, Range, and Electron Yield Comparisons of the CRANGE Ion-Material Interaction Code”, Nuclear Instruments and Methods in Physics Research Section A 544, 502-505 (2005). https://doi.org/10.1016/j.nima.2005.03.011
C. G. R. Geddes, Cs. Toth, J. van Tilborg, E. Esarey, C. B. Schroeder, J. Cary, and W. P. Leemans, “Guiding of relativistic laser pulses by preformed plasma channels”, Phys. Rev. Lett. 95, 145002 (2005). https://doi.org/10.1103/PhysRevLett.95.145002
Kiran G. Sonnad and John R. Cary, “Control of beam halo formation through nonlinear damping and collimation”, Phys. Rev. ST Accel. Beams 8, 064202 (2005). https://doi.org/10.1103/PhysRevSTAB.8.064202
C. G. R. Geddes, Cs. Tóth, J. van Tilborg, E. Esarey, C. B. Schroeder, D. Bruhwiler, C. Nieter, J. Cary, and W. P. Leemans, “Production of high-quality electron bunches by dephasing and beam loading in channeled and unchanneled laser plasma accelerators”, Phys. Plasmas 12, 056709 (2005). https://doi.org/10.1063/1.1882352
J. R. Cary, R. Giacone, C. Nieter, and D. L. Bruhwiler, “Clean beams from laser wake-field accelerators via optical injection with a cleanup pulse”, Phys. Plasmas 12, 056704 (2005). https://doi.org/10.1063/1.1871196
Jinhyung Lee and John R. Cary, “Longitudinal Cooling of Non neutral Plasma by Energy Exchange”, Phys. Rev. E 71, 036406 (2005). https://doi.org/10.1103/PhysRevE.71.036406
David L. Bruhwiler, Richard Busby, Alexei V. Fedotov, Ilan Ben-Zvi, John R. Cary, Peter Stoltz, Alexey Burov, Vladimir N. Litvinenko, Peter Messmer, Dan T. Abell, and Chet Nieter, “Direct simulation of friction forces for heavy ions interacting with a warm magnetized electron distribution”, AIP Conference Proceedings 773, 394 (2005). https://doi.org/10.1063/1.1949571
Alexei V. Fedotov, Ilan Ben-Zvi, David L. Bruhwiler, Yu. Eidelman, Vladimir N. Litvinenko, N. Malitsky, A. Sidorin I. Meshkov, A. Smirnov, and G. Trubnikov, “Electron cooling dynamics for RHIC”, AIP Conference Proceedings 773, 415 (2005). https://doi.org/10.1063/1.1949575

2004 PUBLICATIONS

D. E. Post, D. B. Batchelor, R. B. Bramley, J. R. Cary, R. H. Cohen, P. Colella, and S. C. Jardin, “Report of the Fusion Simulation Project Steering Committee”, J. Fusion Energy 23, 1-26 (2004). https://doi.org/10.1007/s10894-004-1868-0
S.E. Kruger, C.R. Sovinec, D.D. Schnack, and E.D. Held, “Free-boundary Simulations of DIII-D Plasmas with the NIMROD Code”, Computer Physics Communications 164, 34-39 (2004). https://doi.org/10.1016/j.cpc.2004.06.006
Chet Nieter and John R. Cary, “VORPAL: a versatile plasma simulation code”, J. Comp. Phys. 196, 448-473 (2004). https://doi.org/10.1016/j.jcp.2003.11.004
Dimitre A. Dimitrov, Richard Busby, John Exby, David L. Bruhwiler, and John R. Cary, “Secure Web-based invocation of Large-Scale Plasma Simulation Codes”, Computer Physics Communications 164, 464-467 (2004). https://doi.org/10.1016/j.cpc.2004.06.062
Svetlana Shasharina, Robert Eger, and John Cary, “Farsight: application for remote visualization”, Computer Physics Communications 164, 402-407 (2004). https://doi.org/10.1016/j.cpc.2004.06.053
Ireneusz Szcześniak and John R. Cary, “dxhdf5: a software package for importing HDF5 physics data into OpenDX”, Computer Physics Communications 164, 365-369 (2004). https://doi.org/10.1016/j.cpc.2004.06.048
Svetlana Shasharina, Robert Eger, and John Cary, “Data grid for fusion simulations and experiments”, Computer Physics Communications 164, 134-137 (2004). https://doi.org/10.1016/j.cpc.2004.06.021
Peter Messmer and David L. Bruhwiler, “A parallel electrostatic solver for the VORPAL code”, Computer Physics Communications 164, 118-121 (2004). https://doi.org/10.1016/j.cpc.2004.06.018
C.R. Sovinec, A.H. Glasser, T.A. Gianakon, D.C. Barnes, R.A. Nevel, S.E. Kruger, S.J. Plimpton, A. Tarditi, M.S. Chu, and the NIMROD Team, “Nonlinear magnetohydrodynamics with high-order finite elements”, Journal of Computational Physics 195, 355-386 (2004). https://doi.org/10.1016/j.jcp.2003.10.004
R. H. Cohen, A. Friedman, S. M. Lund, A. W. Molvik, E. P. Lee, T. Azevedo, J.-L. Vay, P. Stoltz, and S. Veitzer, “Electron-cloud simulation and theory for high-current heavy-ion beams”, Phys. Rev. ST Accel. Beams 7, 124201 (2004). https://doi.org/10.1103/PhysRevSTAB.7.124201
P. H. Stoltz, S. A. Veitzer, R. H. Cohen, A. W. Molvik, and J.-L. Vay, “Simulation of heavy ion induced electron yield at grazing incidence”, Phys. Rev. ST Accel. Beams 7, 103201 (2004). https://doi.org/10.1103/PhysRevSTAB.7.103201
T. Hellsten, T. Johnson, J. Carlsson, L.-G. Eriksson, J. Hedin, M. Laxåback, and M. Mantsinen, “Effects of finite drift orbit width and RF-induced spatial transport on plasma heated by ICRH”, Nuclear Fusion 44, 892 (2004). https://doi.org/10.1088/0029-5515/44/8/008
Cameron G.R. Geddes, Csaba Toth, Jeroen van Tilborg, Eric Esarey, Carl B. Schroeder, David L. Bruhwiler, Chet Nieter, John R. Cary, and Wim P. Leemans, “High-quality electron beams from a laser wakefield accelerator using plasma-channel guiding”, Nature 431, 538-541 (2004). https://doi.org/10.1038/nature02900
Kiran G. Sonnad and John. R. Cary, “Finding a nonlinear lattice with improved integrability using Lie transform perturbation theory”, Phys. Rev. E 69, 056501 (2004). https://doi.org/10.1103/PhysRevE.69.056501
Arvind S. Krishna, Nanbor Wang, Balachandran Natarajan, Anniruddha Gokhale, Douglas C. Schmidt, and Gautam Thaker, “CCMPerf: a benchmarking tool for CORBA component model implementations”, In IEEE Proceedings of the 10th Real-time Technology and Application Symposium (RTAS’04), Toronto, CA (2004). http://doi.org/10.1109/RTTAS.2004.1317258
Nanbor Wang, Chris Gill, Douglas C. Schmidt, and Venkita Subramonian, “Configuring real-time aspects in component middleware”, In Proceedings of the International Symposium on Distributed Objects and Applications (DOA’04), Agia Napa, Cyprus (2004). https://www.dre.vanderbilt.edu/~schmidt/PDF/doa04_ciao.pdf
Nanbor Wang and Christopher Gill, “Improving real-time system configuration via a QoS-aware CORBA component model”, In Proceedings of the 37th Annual Hawaii International Conference on System Sciences (HICSS 2004), Honolulu, HW (2004). https://doi.org/10.1109/HICSS.2004.1265647
Venkita Subramonian, Liang-Jui Shen, Christopher Gill, and Nanbor Wang, “The design and performance of dynamic and static configuration mechanisms in component middleware for distributed real-time and embedded systems”, In the 25th IEEE Real-Time Systems Symposium (RTSS), Lisbon, Portugal (2004). https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.114.1836&rep=rep1&type=pdf
A.S. Johnson, V. Serbo, M. Turri, B. Anathan, and D.A. Alexander, “Interactive data analysis on the grid using globus 3 and jas3”, In Proceeding of the 2004 Conference for Computing in High-Energy and Nuclear Physics (CHEP 04), Interlaken, Switzerland (2004). https://indico.cern.ch/event/0/contributions/1294252/contribution.pdf
P. Messmer, “Electromagnetic modeling of dusty plasmas”, In Proc. International Workshop on Applied Parallel Computing (PARA04), State-of-the-Art in Scientific Computing, Lecture Notes in Computer Science 3732, 583-589 (2004). https://doi.org/10.1007/11558958_69
Cameron G.R. Geddes, Csaba Toth, Jeroen van Tilborg, Eric Esarey, Carl B. Schroeder, David L. Bruhwiler, John R. Cary, and Wim Leemans, “Laser guiding at relativistic intensities and wakefield particle acceleration in plasma channels”, AIP Conference Proceedings 737, 521 (2004). https://doi.org/10.1063/1.1842585
P. Messmer, D.L. Bruhwiler, J.R. Cary, and D.A. Dimitrov, “Ion acceleration and wave generation by overdense laser-plasma interaction”, AIP Conference Proceedings 737, 621 (2004). https://doi.org/10.1063/1.1842600
Dimitre A. Dimitrov, David L. Bruhwiler, John R. Cary, Peter Messmer, Cameron G.R. Geddes, Wim Leemans, and Eric Esarey, “Particle-in-cell simulations of intense laser pulses coupling into plasma channels”, AIP Conference Proceedings 737, 469 (2004). https://doi.org/10.1063/1.1842579
Svetlana G. Shasharina, Nanbor Wang, John R. Cary, “Grid Service for Visualization and Analysis of Remote Fusion Data”, In Proceedings of the 2nd International Workshop on Challenges of Large Applications in Distributed Environments (CLADE 2004), 34-43, Honolulu, Hawaii (2004). https://doi.org/10.1109/CLADE.2004.1309090
S.E. Kruger and D.D. Schnack, “Simulations of a DIII-D plasma disruption with the NIMROD code”, In Proceedings of the 20th International Atomic Energy Agency Fusion Energy Conference (Invited), Vienna, Austria (2004). https://inis.iaea.org/search/search.aspx?orig_q=RN:36090373

2003 PUBLICATIONS

David L. Bruhwiler, Dimitre A. Dimitrov, John R. Cary, Eric Esarey, Wim Leemans, and Rodolfo E. Giacone, “Particle-in-cell simulations of tunneling ionization effects in plasma-based accelerators”, Phys. Plasmas 10, 2022 (2003). (Invited) https://doi.org/10.1063/1.1566027
P. H. Stoltz, M. A. Furman, J.-L. Vay, A. W. Molvik, and R. H. Cohen, “Numerical Simulation of the Generation of Secondary Electrons in the High Current Experiment”, Phys. Rev. ST Accel. Beams 6, 054701 (2003). https://doi.org/10.1103/PhysRevSTAB.6.054701

2002 PUBLICATIONS

P. H. Stoltz, J. R. Cary, G. Penn, and J. Wurtele, “Efficiency of a Boris-like integration scheme with spatial stepping”, Phys. Rev. ST Accel. Beams 5, 094001 (2002). https://doi.org/10.1103/PhysRevSTAB.5.094001

2001 PUBLICATIONS

David L. Bruhwiler, Rodolfo E. Giacone, John R. Cary, John P. Verboncoeur, Peter Mardahl, Eric Esarey, Wim Leemans, and Brad Shadwick, “Particle-in-cell simulations of plasma accelerators and electron-neutral collisions”, Phys. Rev. ST Accel. Beams 4, 101302 (2001). https://doi.org/10.1103/PhysRevSTAB.4.101302
P.H. Stoltz and B.V. Oliver, “Growth rates of the m=0 mode for Bennett equilibria with varying radial density and temperature profiles”, Physics of Plasmas 8, 3096 (2001). https://doi.org/10.1063/1.1367323

2000 PUBLICATIONS

S.G. Shasharina, D.L. Bruhwiler, and J.R. Cary, “Nonlinear Optimization in the C++ Beam Optics Code”, European Particle Accelerator Conference, 1071-1073 (2000). https://accelconf.web.cern.ch/e00/PAPERS/TUP6A08.pdf

1999 PUBLICATIONS

D.L. Bruhwiler, J.R. Cary, and S.G. Shasharina, “Object Oriented C++ Software Components for Accelerator Design”, Particle Accelerator Conference, 369-371 (1999). https://cds.cern.ch/record/553206/files/wedl6.pdf
J. R. Cary and S. G. Shasharina, “Efficient Differential Algebra Computations”, Particle Accelerator Conference, 377-381 (1999). https://accelconf.web.cern.ch/p99/PAPERS/WECR2.PDF

1998 PUBLICATIONS

D. L. Bruhwiler, J. R. Cary, and S. G. Shasharina, “Symplectic Propagation of the Map, Tangent Map and Tangent Map Derivative through Quadrupole and Combined-Function Dipole Magnets without Truncation”, Particle Accelerator Conference, 1171-1173 (1998). http://accelconf.web.cern.ch/e98/PAPERS/THP41C.PDF

1995 PUBLICATIONS

David L. Bruhwiler and Tasso J. Kaper, “Wavenumber Transport: Scattering of Small-Scale Internal Waves by Large-Scale Wavepackets”, Journal of Fluid Mechanics 289, 379-405 (1995). https://doi.org/10.1017/S0022112095001376

1994 PUBLICATIONS

David L. Bruhwiler and John R. Cary, “Dynamics of Particles Trapping and Detrapping in Coherent Wave Packets”, Physical Review E 50, 3949-3961 (1994). https://doi.org/10.1103/PhysRevE.50.3949
Etienne Forest, Michael F. Reusch, David L. Bruhwiler, and Ali Amiry, “The Correct Local Description for Tracking in Rings”, Particle Accelerators 45, 65-94 (1994). https://cds.cern.ch/record/1108291/files/p65.pdf
David L. Bruhwiler and John R. Cary, “Adiabatic Particle Motion in Spatially-Varying Wave Structures”, Particle Accelerators 43, 195-230 (1994). http://cds.cern.ch/record/1108282/files/p195.pdf

1992 PUBLICATIONS

Ellen G. Zweibel and David L. Bruhwiler, “The Effect of Line Tying on Parker’s Instability”, The Astrophysical Journal 399, 318-324 (1992). https://doi.org/10.1086/171927
David L. Bruhwiler and Ellen G. Zweibel, “Energy Spectrum of Particles Accelerated Near a Magnetic x Line”, Journal of Geophysical Research 97, 10,825-10,830 (1992). https://doi.org/10.1029/92JA00828
David L. Bruhwiler and John R. Cary, “Particle Dynamics in a Large-Amplitude Wave Packet”, Physical Review Letters 68, 255-258 (1992). https://doi.org/10.1103/physrevlett.68.255

1991 PUBLICATIONS

David L. Bruhwiler and John R. Cary, “Diffusion of Trajectories in a Simple Hamiltonian System with Slow Periodic Forcing”, Computer Physics Communications 65, 52-56 (1991). https://doi.org/10.1016/0010-4655(91)90153-C

1989 PUBLICATIONS

David L. Bruhwiler and John R. Cary, “Diffusion of Particles in a Slowly Modulated Wave”, Physica D 40, 265-282 (1989). https://doi.org/10.1016/0167-2789(89)90067-5

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