1989-2019 Research Publications

2019 Publications

• M. Elias, D. Curreli, T. G. Jenkins, J. R. Myra, and J. Wright, “Numerical model of the radio-frequency magnetic presheath including wall impurities”, Phys. Plasmas 26, 092508 (2019); https://doi.org/10.1063/1.5109256
• Couëdel, L., D. Artis, M. P. Khanal, C. Pardanaud, S. Coussan, S. LeBlanc, T. Hall et al. “Influence of magnetic field strength on nanoparticle growth in a capacitively-coupled radio-frequency Ar/C2H2 discharge.” Plasma Research Express 1, no. 1 (2019): 015012. doi: 10.1088/2516-1067/ab045e

2018 Publications

• Pearlman, Marcus, and Jim Browning. “Simulation of a Distributed Cathode in a Linear-Format Crossed-Field Amplifier.” IEEE Transactions on Plasma Science 99 (2018): 1-8. doi: 10.1109/TPS.2018.2844732
• Lécz, Zsolt, Alexander Andreev, Ivan Konoplev, Andrei Seryi, and Jonathan Smith. “Trains of electron micro-bunches in plasma wake-field acceleration.” Plasma Physics and Controlled Fusion 60, no. 7 (2018): 075012 doi: 10.1088/1361-6587/aac064
• Palenzuela, Y. Martinez, B. A. Marsh, J. Ballof, R. Catherall, K. Chrysalidis, T. E. Cocolios, B. Crepieux et al. “Enhancing the extraction of laser-ionized beams from an arc discharge ion source volume.” Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms 431 (2018): 59-66. doi: 10.1016/j.nimb.2018.06.006
• Zhang, H., I. V. Konoplev, G. Doucas, and J. Smith. “Concept of a tunable source of coherent THz radiation driven by a plasma modulated electron beam.” Physics of Plasmas 25, no. 4 (2018): 043111. doi: 10.1063/1.5017551

2017 Publications

• Hidding, Bernhard, Erik Adli, Gerard Andonian, Andrew Beaton, David Bruhwiler, John Cary, Christine Clarke et al. “First Measurements of Trojan Horse Injection in a Plasma Wakefield Accelerator.” In 8th Int. Particle Accelerator Conf.(IPAC’17), Copenhagen, Denmark, 14â 19 May, 2017, pp. 1252-1257. JACOW, Geneva, Switzerland, 2017.
• Higuera, Adam V., and John R. Cary. “Structure-preserving second-order integration of relativistic charged particle trajectories in electromagnetic fields.” arXiv preprint arXiv:1701.05605 (2017).
• King, J. R., Scott E. Kruger, Richard J. Groebner, James D. Hanson, J. D. Hebert, Eric D. Held, and J. R. Jepson. “Effect of scrape-off-layer current on reconstructed tokamak equilibrium.” Physics of Plasmas 24, no. 1 (2017): 012504. doi:10.1063/1.4972822
• Wei, Y., S. Jamison, G. Xia, K. Hanahoe, Y. Li, J. D. A. Smith, and C. P. Welsch. “Beam quality study for a grating-based dielectric laser-driven accelerator.” Physics of Plasmas 24, no. 2 (2017): 023102. doi: 10.1063/1.4975080
• Wei, Y., G. Xia, J. D. A. Smith, and C. P. Welsch. “Dual-gratings with a Bragg reflector for dielectric laser-driven accelerators.” Physics of Plasmas 24, 073115 (2017); doi: 10.1063/1.4993206

2016 Publications

• J.R. Cary, D.T. Abell, G.I. Bell, B.M. Cowan, J.R. King, D. Meiser, I.V. Pogorelov, G.R. Werner, “Select Advances in Computational Accelerator Physics,” IEEE Transactions on Nuclear Science 63(2), pp. 823 – 841 (2016). doi: 10.1109/TNS.2015.2500686
• T. G. Jenkins and D. N. Smithe, High-Performance Computational Modeling of Plasma-Surface Interactions and RF Antennas, in Proceedings of the 26th IAEA Fusion Energy Conference, Kyoto, Japan, October 2016 (International Atomic Energy Agency, Vienna, Austria, 2016, Paper TH/P4-34).
• King, J. R., Pankin, A. Y., Kruger, S. E., & Snyder, P. B. (2016). The impact of collisionality, FLR, and parallel closure effects on instabilities in the tokamak pedestal: Numerical studies with the NIMROD code. Physics of Plasmas (1994-present), 23(6), 062123. doi:10.1063/1.4954302
• King, J. R., Burrell, K. H., Garofalo, A. M., Groebner, R. J., Kruger, S. E., Pankin, A. Y., & Snyder, P. B. (2016). NIMROD modeling of quiescent H-mode: reconstruction considerations and saturation mechanism. Nuclear Fusion, 57(2), 022002. doi:10.1088/0029-5515/57/2/022002

2015 Publications

• Pankin, A. Y., T. Rafiq, A. H. Kritz, G. Y. Park, C. S. Chang, D. Brunner, R. J. Groebner et al. “Kinetic modeling of divertor heat load fluxes in the Alcator C-Mod and DIII-D tokamaks.” arXiv preprint arXiv:1506.07899 (2015). doi.org:10.1063/1.4931050
• Pletzer, Alexander, and David Fillmore. “Conservative interpolation of edge and face data on n dimensional structured grids using differential forms.” Journal of Computational Physics (2015). doi:10.1016/j.jcp.2015.08.029
• T. G. Jenkins and E. D. Held, “Coupling extended magnetohydrodynamic fluid codes with radiofrequency ray tracing codes for fusion modeling”, J. Comp. Phys. 297, 427 (2015). doi:10.1016/j.jcp.2015.05.035
• Jenkins, T. G., and D. N. Smithe. “Benchmarking sheath subgrid boundary conditions for macroscopic-scale simulations.” Plasma Sources Science and Technology 24.1 (2015): 015020. doi:10.1088/0963-0252/24/1/015020
• Fernandez-Gutierrez, Sulmer, Jim Browning, Ming-Chieh Lin, David N. Smithe, and Jack Watrous. “Phase-control of a rising sun magnetron using a modulated, addressable, current source.” Journal of Vacuum Science & Technology B 33, no. 3 (2015): 031203. doi:10.1116/1.4916631

2014 Publications

• Jenkins, Thomas G.; Smithe, David N., “RF models for plasma-surface interactions: Sheath boundary conditions with dielectrics,” Plasma Sciences (ICOPS) held with 2014 IEEE International Conference on High-Power Particle Beams (BEAMS), 2014 IEEE 41st International Conference on , vol., no., pp.1,6, 25-29 May 2014 doi:10.1109/PLASMA.2014.7012772
• King, J. R., and S. E. Kruger. “A parametric study of the drift-tearing mode using an extended-magnetohydrodynamic model.” Physics of Plasmas (1994-present) 21.10 (2014): 102113. doi:10.1063/1.4899036
• Meiser, Dominic.
• Browning, J., Fernandez-Gutierrez, S., Lin, M. C., Smithe, D. N., & Watrous, J. (2014). Phase control and fast start-up of a magnetron using modulation of an addressable faceted cathode. Applied Physics Letters, 104(23), 233507 doi:10.1063/1.4883395.
• Sonnad, Kiran G., Kenneth C. Hammond, Robert M. Schwartz, and Seth A. Veitzer. “Simulation and analysis of TE wave propagation for measurement of electron cloud densities in particle accelerators.” Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment 754 (2014): 83-93. doi:10.1016/j.nima.2014.03.052

2013 Publications

• McGee, S. A., D. Meiser, C. A. Regal, K. W. Lehnert, and M. J. Holland. “Mechanical resonators for storage and transfer of electrical and optical quantum states.” Physical Review A 87, no. 5 (2013): 053818.
• T. G. Jenkins, T. M. Austin, D. N. Smithe, J. Loverich, and A. H. Hakim, “Time-domain simulation of nonlinear radiofrequency phenomena”, Phys. Plasmas 20, 012116 (2013).
• Schlutt, M. G., C. C. Hegna, C. R. Sovinec, E. D. Held, and S. E. Kruger. “Self-consistent simulations of nonlinear magnetohydrodynamics and profile evolution in stellarator configurations,” 25 April 2013, Physics of Plasmas (Vol.20, Issue 5), doi:10.1063/1.4802834

2012 Publications

• Travis M. Austin, Marian Brezina, Thomas A. Manteuffel, John Ruge, Automatic Construction of Sparse Preconditioners for High-Order Finite Element Methods pp.84-102 (19), DOI: 10.2174/978160805291211101010084
• B. Hidding, G. Pretzler, J. B. Rosenzweig, T. Königstein, D. Schiller, D. L. Bruhwiler, Ultracold Electron Bunch Generation via Plasma Photocathode Emission and Acceleration in a Beam-Driven Plasma Blowout, APS Journals, Phys. Rev. Lett., Volume 108, Issue 3, January 2012, DOI: 10.1103/PhysRevLett.108.035001. Generate BibTex.
• Lebrun, P. L., Amundson, J. F., Spentzouris, P. G., Veitzer, S. A., & Stoltz, P. (2012). Simulation of the Electron Flux Into the Main Injector Electron Cloud Retarding Field Analyzer Using Vorpal (No. FERMILAB-PUB-12-584-APC-CD). Fermi National Accelerator Laboratory (FNAL), Batavia, IL.
• P. Piot, C. Behrens, C. Gerth, M. Dohlus, F. Lemery, D. Mihalcea, P. Stoltz, and M. Vogt, Generation and Characterization of Electron Bunches with Ramped Current Profiles in a Dual-Frequency Superconducting Linear Accelerator, APS Journals, Phys. Rev. Lett., Volume 108, Issue 3, January 2012, DOI: 10.1103/PhysRevLett.108.034801. Generate BibTex.
• Andrew R. Poppea, Marcus Piquette, Alexandre Likhanskii, Mihály Horányi, The Effect of Surface Topography on the Lunar Photoelectron Sheath and Electrostatic Dust Transport, Icarus, 1 August 2012, DOI: 10.1016/j.icarus.2012.07.018.
• T. G. Jenkins and S. E. Kruger, “Fluid equations in the presence of electron cyclotron current drive”, Phys. Plasmas 19, 122508 (2012). DOI: 10.1063/1.4773211
• Jingwen Zhang, Scott Sides and Frank S. Bates, “Ordering of Sphere Forming SISO Tetrablock Terpolymers on a Simple Hexagonal Lattice”, Macromolecules, 2012, 45 (1), pp 256–265. PDF. DOI: 10.1021/ma202196c

2011 Publications

• Dan T. Abell, PTC Library User Guide, Tech-X Corporation, Boulder, CO (2011).
• T.M. Austin et al., Validation of frequency extraction calculations from time-domain simulations of accelerator cavities, Comput. Sci. Disc. 4 (2011) 015004.
• H. Childs, E. Brugger, B. Whitlock, J. Meredith, S. Ahern, K. Bonnell, M. Miller, G. H. Weber, C. Harrison, D. Pugmire, T. Fogal, C. Garth, A. Sanderson, E. W. Bethel, M. Durant, D. Camp, J. M. Favre, O. Ruebel, P. Navratil, M. Wheeler, P. Selby, and F. Vivodtzev. VisIt: An End-User Tool For Visualizing and Analyzing Very Large Data. In Proceedings of SciDAC 2011. (PDF). (BibTeX).
• “A Discontinuous Galerkin Method for Ideal Two-Fluid Plasma Equations”, John Loverich, Ammar Hakim, Uri Shumlak, Communications in Computational Physics, 9 (2011), pp. 240-268.
• Stephen D. Miller, Jean-Christophe Bilheux, Shaun S. Gleason, Trent L. Nichols, Philip R. Bingham and Mark L. Green (2011). Large-Scale User Facility Imaging and Scattering Techniques to Facilitate Basic Medical Research, Medical Imaging, Okechukwu Felix Erondu (Ed.), ISBN: 978-953-307-774-1, InTech.
• “An efficient method for solving elliptic boundary element problems with application to the tokamak vacuum problem”, A. Pletzer and H. R. Strauss, Computer Physics Communications, (pending publication) COMPHY4462PII: S0010-4655(11)00154-8, DOI: 10.1016/j.cpc.2011.05.001.
• Cowan, Benjamin M., David L. Bruhwiler, Estelle Cormier-Michel, Eric Esarey, Cameron GR Geddes, Peter Messmer, and Kevin M. Paul. “Characteristics of an envelope model for laser–plasma accelerator simulation.” Journal of Computational Physics 230, no. 1 (2011): 61-86., doi:10.1016/j.jcp.2010.09.009.
• Insepov, Zeke, Jim Norem, Seth Veitzer, and Sudhakar Mahalingam. “Modeling arcs.” arXiv preprint arXiv:1108.0861 (2011).

2010 Publications

• Austin, T. M., J. R. Cary, D. N. Smithe, and C. Nieter. “Alternating direction implicit methods for FDTD using the Dey-Mittra embedded boundary method.” Open Plasma Physics Journal 3 (2010): 29-35.
• B. J. Burke, S. E. Kruger, C. C. Hegna, P. Zhu, P. B. Snyder, C. R. Sovinec, and E. C. Howell, “Edge localized linear ideal magnetohydrodynamic instability studies in an extended-magnetohydrodynamic code”, AIP, Physics of Plasmas, Volume 17, Issue 3, 032103 (2010); doi:10.1063/1.3309732.
• John R. Cary, Ammar Hakim, Mahmood Miah, Scott Kruger, Alexander Pletzer, Svetlana Shasharina, Srinath Vadlamani, Ronald Cohen, Tom Epperly, Tom Rognlien, Alexei Pankin, Richard Groebner, Satish Balay, Lois McInnes, Hong Zhang, “FACETS – a Framework for Parallel Coupling of Fusion Components,” pp.435-442, 2010 18th Euromicro Conference on Parallel, Distributed and Network-based Processing, 2010.
• Choi, S. Mahalingam, J. Loverich, and P. Messmer, “Towards Hall Thruster Erosion Prediction Using a Kinetic Plasma Model and a Molecular Dynamics Simulation,” AIAA-2010-624, 48th AIAA Aerospace Science Meeting, January 2010. DOI: 10.2514/6.2010-624.
• Y. Choi, S. Mahalingam, and J. Loverich, “Predicting Hall Thruster Operational Lifetime Using a Kinetic Plasma Model and a Molecular Dynamics Simulation,” AIAA-2010-6941, 46th AIAA/ASME Joint Propulsion Conference, Nashville, TN, July, 2010. DOI: 10.2514/6.2010-6941.
• Dimitrov, Dimitre A., Richard Busby, John R. Cary, Ilan Ben-Zvi, John Smedley, Xiangyun Chang, Triveni Rao, Jeffrey W. Keister, Erik M. Muller, and Andrew Burrill. “Simulations of Charge Gain and Collection Efficiency from Diamond Amplifiers.” In MRS Proceedings, vol. 1203, no. 1. Cambridge University Press, 2009.
• Insepov, Zeke, Jim Norem, Thomas Proslier, Dazhang Huang, Sudhakar Mahalingam, and Seth Veitzer. “Modeling rf breakdown arcs.” arXiv preprint arXiv:1003.1736 (2010).
• Z. Insepov, J. Norem, Th. Proslier, S. Mahalingam, and S. Veitzer, “Arcs in Accelerator Structures,” (Talk) Workshop on Unipolar Arcs, January, 2010.
• Z. Insepov, J. Norem, D. Huang, S. Mahalingam and S. Veitzer, “Modeling rf breakdown arcs I: Arc evolution,” arXiv:1003.1736, 2010.
• Insepov, Zeke, Jim Norem, Thomas Proslier, Sudhakar Mahalingam, and S. Veitzer. “Modeling rf breakdown arcs II: plasma/materials interactions.” arXiv preprint arXiv:1006.2370 (2010).
• Insepov, Z., J. Norem, and S. Veitzer. “Atomistic self-sputtering mechanisms of rf breakdown in high-gradient linacs.” Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms 268, no. 6 (2010): 642-650, doi:10.1016/j.nimb.2009.12.016
• Phys. Plasmas 17, 012502 (2010); doi:10.1063/1.3276740 (/12 pages/),“Calculating electron cyclotron current drive stabilization of resistive tearing modes in a nonlinear magnetohydrodynamic model”, Thomas G. Jenkins, Scott E. Kruger, C. C. Hegna, Dalton D. Schnack, and Carl R. Sovinec.
• M. Jonell, J. Menart and S. Mahalingam, “Particle-in-Cell Model of the NEXT Ion Engine at Numerous Throttling Conditions,” AIAA-2010-6863, 46th AIAA/ASME Joint Propulsion Conference, Nashville, TN, July 2010.
• Alexandre Likhanskii, “Particle-in-Cell Modeling of the Pulsed DBD Plasma Actuator“, paper AIAA-2010-5101, 40th Fluid Dynamics Conference and Exhibit, Chicago, Illinois, June 28 – July 1, 2010.
• Alexandre Likhanskii, Mikhail Shneider, Dmitry Opaits, Sergey Macheret, Richard Miles, “Limitations of the DBD effects on the external flow“, paper AIAA-2010-470, 48th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition, Orlando, Florida, Jan. 4-7, 2010.
• Lin, M. C., C. Nieter, P. H. Stoltz, and D. N. Smithe. “Accurately and Efficiently Studying the RF Structures Using a Conformal Finite-Difference Time-Domain Particle-in-Cell Method.” Open Plasma Physics Journal 3 (2010): 48-52.
• “Two-Dimensional Modeling of Ideal Merging Plasma Jets”, J. Loverich and A. Hakim, Journal of Fusion Energy Volume 29, Number 6, (2010), pp. 532-539.
• Mahalingam, Sudhakar, Yongjun Choi, J. O. H. N. Loverich, Peter H. Stoltz, Mike Jonell, and J. Menart. “Dynamic Electric Field Calculations Using a Fully Kinetic Ion Thruster Discharge Chamber Model.” AIAA Paper 6944 (2010).
• S. Mahalingam and J. Menart, “Particle-Based Plasma Simulations for an Ion Engine Discharge Chamber”, Journal of Propulsion and Power, Vol. 26, no. 4, pages 673-688, Jul-Aug, 2010.
• Mahalingam, S., S. A. Veitzer, and P. H. Stoltz. “High-gradient RF box cavity breakdown simulations using 3-D particle tracking code VORPAL.” In Power Modulator and High Voltage Conference (IPMHVC), 2010 IEEE International, pp. 731-734. IEEE, 2010.
• J. Norem, Z. Insepov, D. Huang, S. Mahalingam, and S. Veitzer, “The problem of RF Gradient Limits,” 11th International workshop on Neutrino Factories, Superbeams, and Beta Beams-NuFact09, AIP Conf. Proc., 1222, 1, 2010.
• Prokop, C., P. Piot, M. C. Lin, and P. Stoltz. “Numerical modeling of a table-top tunable Smith–Purcell terahertz free-electron laser operating in the super-radiant regime.” Applied Physics Letters 96, no. 15 (2010): 151502-151502.
• Oliver Rübel, Sean Ahern, E. Wes Bethel, Mark D. Biggin, Hank Childs, Estelle Cormier-Michel, Angela DePace, Michael B. Eisen, Charless C. Fowlkes, Cameron G.R. Geddes, Hans Hagen, Bernd Hamann, Min-Yu Huang, Soile V.E. Keränen, David W. Knowles, Cris L. Luengo Hendriks, Jitendra Malik, Jeremy Meredith, Peter Messmer, Prabhat, Daniela Ushizima, Gunther H. Weber and Kesheng Wu, “Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data“, International Conference on Computational Science, ICCS 2010.
• A V Sobol, D L Bruhwiler, G I Bell, A Fedotov, and V Litvinenko, “Numerical calculation of dynamical friction in electron cooling systems, including magnetic field perturbations and finite time effects, “New Journal of Physics”, accepted 20 August 2010.
• K. Tian, G. Cheng, F. Marhauser, H. Wang, C.D. Zhou, “Benchmark of different electromagnetic codes for the high frequency calculation,” IEEE PAC09 Proceedings, TH5PFP093 (2009).
• Veitzer, Seth A., Sudhakar Mahalingam, Peter H. Stoltz, and J. Norem. “Modeling Breakdown and Electron Orbits in High‐Gradient Accelerating Cavities.” In AIP Conference Proceedings, vol. 1299, p. 376. 2010.
• S. Veitzer, P. Stoltz, S. Mahalingam, and V. Ranjbar, “High-Gradient Breakdown Simulations Using VORPAL,” (Talk) Workshop on Unipolar Arcs, January, 2010.
• “Towards SVOPME: A Scalable Virtual Organization Privilege Management Environment.” Nanbor Wang, Gabriele Garzoglio, Balamurali Ananthan, Steven Timm, Tanya Levshina, International Symposium on Grid Computing, 5-12 March 2010, Taipei, Taiwan.

2009 Publications

• T.M. Austin, J.R. Cary, D.N. Smithe, C. Nieter, “Alternating Direction Implicit Methods for FDTD using the Dey-Mittra Embedded Boundary Method”, accepted for publication in the Open Plasma Physics Journal.
• T.M. Austin, J.R. Cary, S. Ovtchinnikov, G. R. Werner, L. Bellantoni, “Validation of frequency and mode extraction calculations from time-domain simulations of accelerator cavities”, http://arxiv.org/abs/1005.2531.
• T.M. Austin, J.R. Cary, G. Werner, L. Bellantoni, “Validation of Broadly Filtered Diagonalization Method for Extracting Frequencies and Modes from High Performance Computations”, J. of Physics: Conference Series, 180, 012003, 2009.
• Busby, R., D. A. Dimitrov, J. R. Cary, I. Ben-Zvi, X. Chang, J. Keister, E. Miller, T. Rao, J. Smedley, and Q. Wu. “3D Simulations of Secondary Electron Generation and Transport in Diamond Electron Beam Amplifiers.” PAC09 (2009).
• J. A. Carlsson and J. R. Cary, “The hyper-secant Jacobian approximation,” J. Comp. Phys., in review (2009).
• J. R. Cary and A. J. Brizard, “Hamiltonian Theory of Guiding-Center Motion,” Rev. Mod. Phys. 81, 693 (2009); DOI:10.1103/RevModPhys.81.693.
• J R Cary, J Candy, J Cobb, R H Cohen, T Epperly, D J Estep, S Krasheninnikov, A D Malony, D C McCune, L McInnes, A Pankin, S Balay, J A Carlsson, M R Fahey, R J Groebner, A H Hakim, S E Kruger, M Miah, A Pletzer, S Shasharina, S Vadlamani, D Wade-Stein, T D Rognlien, A Morris, S Shende, G W Hammett, K Indireshkumar, A Yu Pigarov and H Zhang, “Concurrent, parallel, multiphysics coupling in the FACETS project,” SciDAC 2009, J. Physics: Conf. Series 180, 012056 (2009).
• Choi, Y., Boyd, I. D., Keidar, M., “Effect of a Magnetic Field in Simulating the Plume-Field of an Anode Layer Hall Thruster”, Journal of Applied Physics, Volume 105, Issue 1, pp. 013303 (2009).
• D.L. Bruhwiler, J.R. Cary, B. Cowan, K. Paul, C.G.R. Geddes, P.J. Mullowney, P. Messmer, E. Esarey, E. Cormier-Michel, W.P. Leemans and J.-L. Vay, “New Developments in the Simulation of Advanced Accelerator Concepts,” 13th Adv. Accel. Concepts Workshop, Eds. C.B. Schroeder, W.P. Leemans and E. Esarey, AIP Conf. Proc. 1086, p. 29 (AIP, Melville, 2009).
• E. Cormier-Michel, C.G.R. Geddes, E. Esarey, C.B. Schroeder, Cs. Toth, D.L. Bruhwiler, K. Paul, B. Cowan and W.P. Leemans, “Scaled simulations of a 10 GeV accelerator,” 13th Adv. Accel. Concepts Workshop, Eds. C.B. Schroeder, W.P. Leemans and E. Esarey, AIP Conf. Proc. 1086, p. 297 (AIP, Melville, 2009).
• B. Cowan, D.L. Bruhwiler, P. Messmer, K. Paul, C.G.R. Geddes, E. Esarey and E. Cormier-Michel, “Laser wakefield simulation using a speed-of-light frame envelope model,” 13th Adv. Accel. Concepts Workshop, Eds. C.B. Schroeder, W.P. Leemans and E. Esarey, AIP Conf. Proc. 1086, p. 309 (AIP, Melville, 2009).
• Di Mitri, S., E. Allaria, L. Badano, C. Bontoiu, M. Cornacchia, P. Craievich, M. Danailov et al. “Design and simulation challenges for FERMI@ elettra.” Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment,” 608, no. 1 (2009): 19-27.
• D. A. Dimitrov, R. Busby, J. R. Cary, I. Ben-Zvi, X. Chang, J. Keister, E. Muller, T. Rao, J. Smedley, and Q. Wu, Investigation of Charge Gain in Diamond Electron Beam Amplifiers via 3D Simulations, in the Proceedings of the PAC09 Particle Accelerator Conference, IEEE (2009).
• D. A. Dimitrov, R. Pundaleeka, A. Qasem, and J. Hefin, ISENS: A system for information integration, exploration, and querying of multi-ontology data sources. International Conference on Semantic Computing, pp. 330–335, IEEE Computer Society 2009.
• D. A. Dimitrov and I. Pogorelov, Path Integral Option Pricing on Nvidia GPUs, poster presentation at the SIAM Annual Meeting ’09, July 2009, Denver. (Presentation slides.)
• “SVOPME: A Scalable Virtual Organization Privileges Management Environment” Gabriele Garzoglio, Nanbor Wang, Igor Sfiligoi, Balamurali Ananthan, International Conference on Computing in High Energy and Nuclear Physics (CHEP’09 21-27 Mar 2009, Prague, Czech Republic), Journal of Physics: Conference Series.
• C.G.R. Geddes, E. Cormier-Michel, E. Esarey, C.B. Schroeder, W.P. Leemans, D.L. Bruhwiler, B. Cowan, C. Nieter, K. Paul and J.R. Cary, “Scaled Simulation Design of High Quality Laser Wakefiled Accelerator Stages,” Proc. Particle Accelerator Conference (Vancouver, 2009), paper WE6RFP075.
• C.G.R. Geddes, E. Cormier-Michel, E. Esarey, K. Nakamura, G.R. Plateau, C.B. Schroeder, Cs. Toth, D.L. Bruhwiler, J.R. Cary, W.P. Leemans, “Plasma gradient controlled injection and postacceleration of high quality electron bunches,” 13th Adv. Accel. Concepts Workshop, Eds. C.B. Schroeder, W.P. Leemans and E. Esarey, AIP Conf. Proc. 1086, p. 12 (AIP, Melville, 2009).
• C. G. R. Geddes, E Cormier-Michel, E. H. Esarey, C. B. Schroeder, J.-L. Vay, W. P. Leemans, D. L.. Bruhwiler, J. R. Cary, B. Cowan, M. Durant, P. Hamill, P. Messmer, P. Mullowney, C. Nieter, K. Paul, S. Shasharina, S. Veitzer, G. Weber, O. Rübel, D. Ushizima, Prabhat, E. W.Bethel, K. Wu. “Large Fields for Smaller Facility Sources.” SciDAC Review, Number 13, Summer 2009. LBNL-2299E.@article{Geddes:SciDACReview:2009, author = {C. G. R. Geddes and E Cormier-Michel and E. H. Esarey and C. B. Schroeder and J.-L. Vay and W. P. Leemans and D. L. Bruhwiler and J. R. Cary and B. Cowan and M. Durant and P. Hamill and P. Messmer and P. Mullowney and C. Nieter and K. Paul and S. Shasharina and S. Veitzer and G. Weber and O. R\”{u}bel and D. Ushizima and Prabhat and E. W.Bethel and K. Wu}, title = {{Large Fields for Smaller Facility Sources}}, journal = {SciDAC Review}, volume = {13}, year = {2009}, note = {LBNL-2299E}, pages = {13–21}, }

• Paul Hamill, David Alexander, Svetlana Shasharina, “Web Service Validation Enabling Test-Driven Development of Service-Oriented Applications,” services, pp.467-470, 2009 Congress on Services – I, July 2009.
• Z. Insepov, J. Norem, D. Huang, S. Mahalingam, P. Stoltz, and S. Veitzer, “Modeling RF Breakdown Arcs,” PAC 2009, TU5PFP001, 2009.
• M. Jonell, J. A. Menart, and S. Mahalingam, “Particle Based Plasma Simulation of NEXT Ion Engine,” AIAA-2009-4818, 45th AIAA/ASME/SAE/ASEE Joint Propulsion Conference, 2009.
• W.P. Leemans, E. Esarey, C.G.R. Geddes, Cs. Toth, C.B. Schroeder, K. Nakamura, A.J. Gonsalves, D. Panasenko, E. Cormier-Michel, G.R. Plateau, C. Lin, D.L. Bruhwiler and J.R. Cary, “Progress on laser plasma accelerator development using transversely and longitudinally shaped plasmas,” Comptes Rendus Physique 10, p. 130 (2009).
• S. Mahalingam, Y. Choi, S. Veitzer, and P. Stoltz, “A particle-in-cell Monte Carlo Collision (PIC-MCC) model for simulations of electron impact collisions in gas mixtures,” (Poster) Gaseous Electronics Conference, Saratoga Springs, NY, 2009.
• S. Mahalingam, C. Nieter, J. Loverich, P. H. Stoltz, D. N. Smithe, and M.C. Lin, “Particle Emission in Cut Cell Geometries of Electromagnetic Particle-in-Cell (EM-PIC) Codes,” 2008 APS-DPP Meeting.
• Sudhakar Mahalingam, Chet Nieter, John Loverich, David Smithe, and Peter Stoltz. “Space Charge Limited Currents Calculations in Coaxial Cylindrical Diodes Using Particle-in-Cell Simulations”, The Open Plasma Physics Journal, vol 2, 63-69, 2009.
• S. Mahalingam, S. A. Veitzer, and P. H. Stoltz, “Electron Impact Excitation Collisions and Atomic Models for RF Breakdown Simulations,” 2009 APS April Meeting, E1.00098, 2009.
• S. Mahalingam, S. Veitzer, P. Stoltz, “Modeling electron impact collisions of gas mixtures using particle-in-cell (PIC) code,” Talk at American Vacuum Society Conference Exhibit Workshop, 2009.
• Stephen D Miller, Kenneth W Herwig, Shelly Ren, Sudharshan S Vazhkudai, Pete R Jemian, Steffen Luitz, Andrei A Salnikov, Igor Gaponenko, Thomas Proffen, Paul Lewis and Mark L Green, “Data management and its role in delivering science at DOE BES user facilities – Past, Present, and Future”, SciDAC 2009, J. Physics: Conf. Series 180, 012049 (2009).
• C. Nieter, J. R. Cary, G. R. Werner, D. N. Smithe, and P. H. Stoltz, “Application of Dey-Mittra conformal boundary algorithm to 3D electromagnetic modeling.” J. Comp. Phys. 228 (2009) 7902-7916.
• J. Norem, Z. Insepov, D. Huang, S. Mahalingam, and S. Veitzer, “The problem of rf gradient limits“, Proc. of the 11th International Workshop on Neutrino Factories, Superbeams and Beta Beams (NuFact09), 2009.
• K. Paul, D.L. Bruhwiler, B. Cowan, J.R. Cary, C. Huang, F.S. Tsung, W.B. Mori, E. Cormier-Michel, C.G.R. Geddes, E. Esarey, S. Martins, R.A. Fonseca and L.O. Silva, “Benchmarking the codes VORPAL, OSIRIS and QuickPIC with Laser Wakefield Acceleration Simulations,” 13th Adv. Accel. Concepts Workshop, Eds. C.B. Schroeder, W.P. Leemans and E. Esarey, AIP Conf. Proc. 1086, p. 315 (AIP, Melville, 2009).
• K. H. Pae, I. W. Choi, S. J. Hahn, J. R. Cary, and J. Lee, “Proposed hole-target for improving maximum proton energy driven by a short intense laser pulse”, Phys. Plasma, 16, 073106 (2009); DOI: 10.1063/1.3174434.
• K. Paul, D. A. Dimitrov, R. Busby, D. L. Bruhwiler, D. Smithe, J. R. Cary, J. Kewisch, D. Kayran, R. Calaga, and I. Ben-Zvi, Half-Cell RF Gun Simulations with the Electromagnetic Particle-in-Cell Code VORPAL, in ADVANCED ACCELERATOR CONCEPTS: Proceedings of the Thirteenth Advanced Accelerator Concepts Workshop, vol. 1086, pp. 334-339, Editors: C. B. Schroeder, W. Leemans, and E. Esarey, AIP, 2009.
• Svetlana Shasharina, John R. Cary, Seth Veitzer, Paul Hamill, Scott Kruger, Marc Durant, and David A. Alexander, VizSchema – Visualization Interface for Scientific Data, IADIS International Conference, Computer Graphics, Visualization, Computer Vision and Image Processing, 2009, page 49. VizSchema Presentation slides (PDF)

• D. N. Smithe, J. R. Cary, and J. A. Carlsson, “Divergence preservation in the ADI algorithms for electromagnetics,” Journal of Computational Physics 228 (2009) 7289-7299.
• K. G. Sonnad and J. R. Cary, “Near equilibrium beam distribution functions for linear and nonlinear periodic focusing systems,” Phys. Rev. ST/AB, submitted (2009).
• Abir Qasem, Dimitre A. Dimitrov, Jeff Heflin, Towards Scalable Information Integration with Instance Coreferences, in the proceedings of International Joint Conferences on Artificial Intelligence (IJCAI09) – Workshop on Information Integration on the Web, Pasadena, July (2009).
• Qiang, J., R. D. Ryne, M. Venturini, A. A. Zholents, and I. V. Pogorelov. “High resolution simulation of beam dynamics in electron linacs for x-ray free electron lasers.” Physical Review Special Topics-Accelerators and Beams 12, no. 10 (2009): 100702.
• Veitzer, SA, LeBrun, P, Cary, JR, Spentzouris, P, Stoltz, PH, and Amundson, JF, “Computation of Electron Cloud Diagnostics and Mitigation in the Main Injector“, J. Phys.: Conf. Ser., 180 012007, doi:10.1088/1742-6596/180/1/012007, 2009.
• S. A. Veitzer, S. Mahalingam, and P. H. Stoltz, “Modeling of breakdown using particle-in-cell (PIC) codes,” High-Gradient Collaboration Workshop, Univ. of Maryland, January, 2008.
• G. R Werner, C. A. Bauer, and J. R. Cary, “Wakefields in Photonic Crystal Cavities,” Phys. Rev. ST/AB, accepted (2009).

2008 Publications

• C Ng, V Akcelik, A Candel, S Chen, L Ge, A Kabel, Lie-Quan Lee, Z Li, E Prudencio, G Schussman, R Uplenchwar, L Xiao, K Ko, T Austin, J R Cary, S Ovtchinnikov, D N Smith, G R Werner and L Bellantoni, “Design and optimization of large accelerator systems through high-fidelity electromagnetic simulations,” J. Physics: Conf. Series 125, 012003 (2008).
• Alexander, D., R. Pundaleeka, S. Tramer, J. Lauret, V. Fine, Facilitating OSG Adoption Through User-Centric Application Monitoring, Open Science Grid All Hands Meeting, 3-4 March 2008.
• Alexander, D. A., C. Li, J. Lauret, and V. Fine. “User centric monitoring (UCM) information service for the next generation of Grid-enabled scientists.” In Journal of Physics: Conference Series, vol. 119, no. 5, p. 052001. IOP Publishing, 2008.
• Babayev, D. A. , G. I. Bell, U. G. Nuriyev, The bandpass problem: combinatorial optimization and library of problems, Journal of Combinatorial Optimization, 1573-2886, 13 February 2008.
• C. A. Bauer, G. R. Werner, and J. R. Cary, “Optimization of a photonic crystal cavity,” J. Appl. Phys. 4 (105), 053107 (2008); DOI:10.1063/1.2973669.
• Bell, George I., David L. Bruhwiler, Alexei Fedotov, Andrey Sobol, Richard S. Busby, Peter Stoltz, Dan T. Abell, Peter Messmer, Ilan Ben-Zvi and Vladimir Litvinenko. “Simulating the dynamical friction force on ions due to a briefly co-propagating electron beam.” Journal of Computational Physics (2008), DOI: 10.1016/j.jcp.2008.06.019.
• David L. Bruhwiler, John R. Cary, Benjamin M. Cowan, Kevin Paul, Cameron G. R. Geddes, Paul J. Mullowney, Peter Messmer, Eric Esarey, Estelle Cormier-Michel, Wim Leemans and Jean-Luc Vay, “New Developments in the Simulation of Advanced Accelerator Concepts,” AIP Conference Proceedings 1086, 29 (Proc. Adv. Accelerator Concepts Workshop, Santa Cruz, CA, 2008).
• J R Cary, J Candy, R H Cohen, S Krasheninnikov, D C McCune, D J Estep, J Larson, A D Malony, A. Pankin, P H Worley, J A Carlsson, A H Hakim, P Hamill, S Kruger, M Miah, S Muzsala, A Pletzer, S Shasharina, D Wade-Stein, N Wang, S. Balay, L McInnes, H Zhang, T Casper, L Diachin, T Epperly, T D Rognlien, M R Fahey, J Cobb, A Morris, S Shende, G W Hammett, K Indireshkumar, D Stotler, A Yu Pigarov, “First results from core-edge parallel composition in the FACETS project,” J. Physics: Conf. Series 125, 012040 (2008).
• J. R. Cary, G. Werner, and D. N. Smithe, “Embedded Boundary Methods for Electromagnetic Simulations,” J. Comp. Phys. in preparation (2008).
• Cowan, Benjamin M. Three-dimensional dielectric photonic crystal structures for laser-driven acceleration. Phys. Rev. ST Accel. Beams 11, 011301 (2008).
• Cetiner, S. O., P. Stoltz, P. Messmer, and J.-L. Cambier. “Dependence of electron peak current on hollow cathode dimensions and seed electron energy in a pseudospark discharge.” J. Appl. Phys. 103, 023304 (2008), DOI:10.1063/1.2832507.
• C.G.R. Geddes, D. Bruhwiler, J.R. Cary, E. Cormier-Michel, E. Esarey, C.B. Schroeder, W.A. Isaacs, N. Stinus, P. Messmer, A. Hakim, K. Nakamura, A.J. Gonsalves, D. Panasenko, G.R. Plateau, Cs. Toth, B.Nagler, J. van Tilborg, T. Cowan, S. M. Hooker and W.P. Leemans, “Laser wakefield simulations towards development of compact particle accelerators,” J. Physics: Conf. Series, 78, 012021 (2007).
• C G R Geddes, D L Bruhwiler, J R Cary, W B Mori, J-L Vay, S F Martins, T Katsouleas, E Cormier-Michel, W M Fawley, C Huang, X Wang, B Cowan, V K Decyk, E Esarey, R A Fonseca, W Lu, P Messmer, P Mullowney, K Nakamura, K Paul, G R Plateau, C B Schroeder, L O Silva, C Toth, F S Tsung, M Tzoufras, T Antonsen, J Vieira and W P Leemans, “Computational studies and optimization of wakefield accelerators,” J. Physics: Conf. Series 125, 012002 (2008).
• C. G. R. Geddes, E. Cormier-Michel, E. Esarey, K. Nakamura, G. R. Plateau, C. B. Schroeder, Cs. Toth, D. L. Bruhwiler, J. R. Cary, and W. P. Leemans, “Plasma Gradient Controlled Injection and Postacceleration of High-Quality Electron Bunches,” AIP Conference Proceedings 1086, 12 (Proc. Adv. Accelerator Concepts Workshop, Santa Cruz, CA, 2008).
• Green, Mark L.; Alexander, David A.; Pundaleeka, Roopa; Matykiewicz, James. “Automatic Certificate Based Account Generation and Secure AJAX Calls in a Grid Portal”, Grid Computing Environments Workshop, 2008. GCE apos;08 Volume , Issue , 12-16 Nov. 2008 Page(s):1 – 8 DOI 10.1109/GCE.2008.4738444
• Hakim, Ammar H. “Extended MHD modelling with the ten-moment equations”, Journal of Fusion Energy, vol 27, No 1-2, June 2008.
• Liangliang Ji, Baifei Shen, Xiaomei Zhang, Fengchao Wang, Zhangyin Jin, Xuemei Li, Meng Wen, and John R. Cary, “Efficient generation of mono-energetic heavy ion bunches with laser induced electrostatic shock,” Phys. Rev. Lett. 101, 164802 (2008); DOI: 10.1103/PhysRevLett.101.164802.
• S. Mahalingam, J. R. Cary, P. H. Stoltz, and S. A. Veitzer, “Modeling breakdown in RF cavities using Particle-in-Cell (PIC) Codes“, Proceedings of EPAC08, Genoa, Italy, June, 2008.
• S. Mahalingam and J. A. Menart, “Physical parametric studies in an ion engine discharge chamber using PIC-MCC simulations,” 44th AIAA/ASME/SAE/ASEE Joint Propulsion Conference & Exhibit, Hartford, CT, 2008.
• S. Mahalingam, S. A. Veitzer, and P. H. Stoltz, “Modeling breakdown processes in RF cavities using Particle-in-Cell (PIC) Codes,” 28th IEEE International Power Modulator & High Voltage Workshop, Las Vegas, NV, May 2008.
• S. Muszala, T. Epperly, and N. Wang, “Babel Fortran 2003 Binding for structured data types.”, Springer Lecture Notes in Computer Science. paper accepted, pending publication. PARA 2008-9th International Workshop on State-of-the-Art in Scientific and Parallel Computing. May, 2008. Trondheim, Norway.
• S. Muszala, G. Alaghband, J. Hack and D.A. Connors , “Natural Load Indices (NLI) in NAMD2 load balancing algorithms.”, Springer Lecture Notes in Computer Science. paper accepted, pending publication. PARA 2008-9th International Workshop on State-of-the-Art in Scientific and Parallel Computing. May, 2008. Trondheim, Norway.
• Karoly Nemeth, Baifei Shen, Yuelin Li, Robert Crowell, Katherine C. Harkay, and John R. Cary, “Laser driven coherent betatron oscillation in a laser-wakefield cavity,” Phys. Rev. Lett. 100, 095002 (2008), doi:10.1103/PhysRevLett.100.095002.
• K. Paul, D. A. Dimitrov, R. Busby, D. L. Bruhwiler, D. Smithe, J. R. Cary, J. Kewisch, D. Kayran, R. Calaga, and I. Ben-Zvi, “Half-Cell RF Gun Simulations with the Electromagnetic Particle-in-Cell Code VORPAL,” AIP Conference Proceedings 1086, 334 (Proc. Adv. Accelerator Concepts Workshop, Santa Cruz, CA, 2008).
• K. Paul, C. Huang, D. L. Bruhwiler, W. B. Mori, F. S. Tsung, E. Cormier-Michel, C. G. R. Geddes, B. Cowan, J. R. Cary, E. Esarey, R. A. Fonseca, S. F. Martins, and L. O. Silva, “Benchmarking the Codes VORPAL, OSIRIS, and QuickPIC with Laser Wakefield Acceleration Simulations,” AIP Conference Proceedings 1086, 315 (Proc. Adv. Accelerator Concepts Workshop, Santa Cruz, CA, 2008).
• Penescu L., R. Catheralla, J. Lettrya, and T. Storaa, “Numerical simulations of space charge effects and plasma dynamics for FEBIAD ion sources.” Proceedings of the XVth International Conference on Electromagnetic Isotope Separators and Techniques Related to their Applications Volume 266, Issues 19-20, Pages 4415-4419, October 2008. doi:10.1016/j.nimb.2008.05.071
• Pletzer, A., D. McCune, S. Muszala, S. Vadlamani, S. Kruger, “Exposing Fortran Derived Types to C and Other Languages, Computing in Science and Engineering”, July/August 2008.
• A. Qasem, D. A. Dimitrov, and J. Heflin. “Efficient Selection and Integration of Data Sources for Answering Semantic Web Queries”. In ICSC 08: Proceedings of the Second IEEE International Conference on Semantic Computing. IEEE Computer Society Press, pp. 245-252, IEEE (c), August 2008. Preprint.
• A. Qasem, D. A. Dimitrov, and J. Heflin, “Goal Node Search for Semantic Web Source Selection”. In WI 08: Proceedings of the International Conference on Web Intelligence. IEEE Computer Society Press, pp. 566-569, IEEE (c), 2008. Preprint.
• A. Qasem, D. A. Dimitrov, and J. Heflin, “ISENS: A Multi-ontology Query System for the Semantic Deep Web. In Proc. of the Workshop on the Semantic Web Meets the Deep Web”, IEEE CEC08 and EEE08, pages 396–9. IEEE Comp. Soc. Press, 2008.
• Ranjbar, V. H. and P. Ivanov, “Chromaticity and wakefield effect on the transverse motion of longitudinal bunch slices in the Fermilab Tevatron.” Phys. Rev. ST Accel. Beams 11, 084401 (2008).
• C M Roach, M Walters, R V Budny, F Imbeaux, T W Fredian, M Greenwald, J A Stillerman, D A Alexander, J Carlsson, J R Cary, F Ryter, J Stober, P Gohil, C Greenfield, M Murakami, G Bracco, B Esposito, M Romanelli, V Parail, P Stubberfield, I Voitsekhovitch, C Brickley, A R Field, Y Sakamoto, T Fujita, T Fukuda, N Hayashi, G M D Hogeweij, A Chudnovskiy, N A Kinerva, C E Kessel, T Aniel, G T Hoang, J Ongena, E J Doyle, W A Houlberg, A R Polevoi, “The 2008 Public Release of the International Multi-tokamak Confinement Profile Database,” Nuclear Fusion 48 (2008) 125001.
• P Spentzouris, J Cary, L C McInnes, W Mori, C Ng, E Ng and R Ryne, “Community petascale project for accelerator science and simulation: advancing computational science for future accelerators and accelerator technologies,” J. Physics: Conf. Series 125, 012005 (2008).
• Stoltz, Peter H., Brian Granger, Ammar Hakim, Scott W. Sides and Seth A. Veitzer. “Effects of Sputtering of and Radiation by Aluminium on Magnetized Target Fusion Plasmas”, Journal of Fusion Energy, vol 27, No 1-2, June 2008.
• S. Shasharina, J. R. Cary, A. Hakim, G. R. Werner, S. Kruger, A. Pletzer, “FACETS – A Multiphysics Parallel Component Framework,” COMPFRAME 2008 (Karlsruhe, Germany).
• Talin, Bernard, Annette Calisti, James W. Dufty, and Ilya V. Pogorelov. “Electron dynamics at a positive ion.” Physical Review E 77, no. 3 (2008): 036410.
• Tan, C. Y. and V. H. Ranjbar. “Analytic approximation of the head-tail phase difference from continuous transverse excitation for measuring chromaticity”. Phys. Rev. ST Accel. Beams 11, 032802 (2008).
• Xiang, Nong and John R. Cary. “Second-Harmonic Generation of Electron-Bernstein Waves in an Inhomogeneous Plasma”. Phys. Rev. Lett. 100, 085002 (2008).

2007 Publications

• Alexander, D., R. Pundaleeka, S. Tramer, J. Lauret, and V. Fine. “Portlets for User Centric Job and Task Monitoring for Open Science Grid Virtual Organizations.” In International Workshop on Grid Computing Environments, no. 3. 2007.
• J. R. Cary and N. Xiang, “Wave excitation in inhomogeneous dielectric media,” Phys. Rev. E 76, 055401(R) (2007).
• D. A. Dimitrov, R. E. Giacone, D. L. Bruhwiler, R. Busby, J. R. Cary, C. G. R. Geddes, E. Esarey, and W. P. Leemans. “Coupling of laser energy into plasma channels.” Phys. Plasmas 14, 043105 (2007)
• I. Doxas, C. Nieter, D. C. Radford, K. Lagergren, John R. Cary, “An Approximate Method for Linear Signal Decomposition in Gamma-ray Tracking Detectors,” Nuc. Inst. Meth. 580, 1331-1337 (2007).
• Perez, Fernando, and Brian E. Granger. “IPython: a system for interactive scientific computing.” Computing in Science & Engineering 9, no. 3 (2007): 21-29.
• A. Qasem, D. A. Dimitrov, and J. Heflin, “Efficient Selection and Integration of Data Sources for Answering Semantic Web Queries. In New Forms of Reasoning for the Semantic Web: Scalable, Tolerant and Dynamic”, Workshop, 6th International Semantic Web Conference (ISWC2007), 2007.
• Svetlana G. Shasharina, Chuang Li, Nanbor Wang, Rooparani Pundaleeka, David Wade-Stein, “Distributed Technologies for Remote Access of HDF Data”, In proceeding of 16th IEEE International Workshops on Enabling Technologies: Infrastructures for Collaborative Enterprises (WETICE-2007), June 18-20, Paris, France, p. 255-260.” Presentation slides (PDF)

• S. Shasharina, N.Wang, S. Muszala, R. Pundaleeka, “Grid and Component Technologies in Physics Applications,” proceedings of ICALEPCS 2007, October 15-19, 2007, Knoxville, TN. Presentation slides (PDF).

• Shen, Baifei, Yuelin Li, Karoly Nemeth, Hairong Shang, Yong-chul Chae, Robert Soliday, Robert Crowell, Edward Frank, William Gropp, and John Cary. “Electron injection by a nanowire in the bubble regime.” Physics of plasmas 14 (2007): 053115.
• Shen, Baifei, Yuelin Li, M. Y. Yu, and John Cary. “Bubble regime for ion acceleration in a laser-driven plasma.” Physical Review E 76, no. 5 (2007): 055402.
• David N Smithe, “Time domain modeling of plasmas at RF time-scales“, 2007 J. Phys.: Conf. Ser. 78 012069. doi: 10.1088/1742-6596/78/1/012069.
• Seth A. Veitzer, Peter H. Stoltz, John J. Barnard, “Evolution of the energy distribution of ions moving in aluminum targets”, Nuclear Instruments and Methods in Physics Research, Section A, v. 577 (2007), 207-210, doi:10.1016/j.nima.2007.02.089.
• S. A. Veitzer and P. H. Stoltz, “Simulations of electron generation and dynamics in a hollow cathode with applied magnetic field”, Nucl. Instrum. and Meth. in Physics Research Section B, v. 261, (2007), 204-208, doi:10.1016/j.nimb.2007.04.291.
• Wang, Nanbor, Rooparani Pundaleeka, and Johan Carlsson. “Distributed component support for integrating large-scale parallel HPC applications.” In Proceedings of the 2007 symposium on Component and framework technology in high-performance and scientific computing, pp. 141-150. ACM, 2007.
• G. R. Werner and J. R. Cary, “A Stable FDTD Algorithm for Non-diagonal, Anisotropic Dielectrics,” J. Comp. Phys. 226, 1085-1101 (2007), doi:10.1016/j.jcp.2007.05.008.

2006 Publications

• Alexander, David A., Balamurali Ananthan, Tony Johnson, and Victor Serbo. “Framework for interactive parallel dataset analysis on the grid.” In Parallel Processing Workshops, 2006. ICPP 2006 Workshops. 2006 International Conference on, pp. 7-pp. IEEE, 2006.
• Dimirov, D. A., J. Heflin, and A. Qasem and N. Wang, “Information Integration Via an End-to-End Distributed Semantic Web System”, 5th International Semantic Web Conference (ISWC2006), 4273 (2006)
• Hakim, Ammar, J. Loverich, and U. Shumlak. “A high resolution wave propagation scheme for ideal Two-Fluid plasma equations.” Journal of Computational Physics 219, no. 1 (2006): 418-442.
• Messmer, Peter, and Ralph Bodenner. “Accelerating scientific applications using FPGAs.” XCell Journal 10, no. 1 (2006): 33-57.
• Messmer, Peter, David Smithe, and Paul Schoessow. “FPGA-accelerated Finite-Difference Time-Domain Simulation on the Cray XD1 using Impulse C.”
• Xiang, Nong, John R. Cary, Daniel C. Barnes, and Johan Carlsson, “Low-noise electromagnetic deltaf particle-in-cell simulation of electron Bernstein waves”, Phys. Plasmas 13, 062111 (2006).
• Fedotov, A. V., D. L. Bruhwiler, A. O. Sidorin, D. T. Abell, I. Ben-Zvi, R. Busby, J. R. Cary, and V. N. Litvinenko. “Numerical study of the magnetized friction force.” Physical Review Special Topics-Accelerators and Beams 9, no. 7 (2006): 074401.
• Sides, Scott W., Bumjoon J. Kim, Edward J. Kramer, and Glenn H. Fredrickson. “Hybrid particle-field simulations of polymer nanocomposites.” Physical review letters 96, no. 25 (2006): 250601.
• Stoltz, P. H., J. P. Verboncoeur, R. H. Cohen, A. W. Molvik, J-L. Vay, and S. A. Veitzer. “Modeling ion-induced electrons in the High Current Experiment.” Physics of plasmas 13, no. 5 (2006): 056702-056702.
• Abell, Dan T. “Numerical Computation of High-Order Transfer Maps for RF Cavities”, Phys. Rev. ST Accel. Beams 9, 052001 (2006)
• Messmer, Peter and David L. Bruhwiler. “Simulating laser pulse propagation and low-frequency wave emission in capillary plasma channel systems with a ponderomotive guiding center model”, Phys. Rev. ST Accel. Beams 9, 031302 (2006)